RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC9267408

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr8

Start:

7730226

End:

7734888

Strand:

+

Ref_name:

LOC9267408

Sequence
(XR_001548030.2):

CCAAGUGACCACGUUAUCUCUCGUUCUCUCUCCUUUCUUCUCUCGUCUGCUAGCUCUCAUCUCCUGCUCUGGGACACACCAUUGCAGGCCAGAGCAAUGAAGAUUAGGUUUGUCCUUCUAGAUCCGGUCUCUUCCCCCUCGCUCCUGUCACUGGAUCGGGAGUUGGUCGUCGCGGGGCUGGGGUUGAGAGGAGGGGUGGGGGAGGGGGCGGGCUGGUUGUUGUAGAGAUACGGGGGGUGUCACCAAUAGCGCCAAGAAGGUUGAGGGGAUGGAGGAGAUGUGGCGGUAGCGGCCGGCGGUGAUGAAGAGGUGGCGGAUUUCCUCCCUGCACGCGUAUCUCUGUCCUCUGAGUACAAAUUUGUGGUGGCUUCCUUUGCCUUCUCCUACAGCGACCACCACCCUCCUCCUCAUUUCUCCCACCUCGAGUGCGUCGCUGCUGUCACCCAUCCAGAGCGAUGAUCCAACCCCGAGGCCUAGACUUUUGUAUGGAUACAAUGUAUUAUGUCGAACCACAACCUUUGUACAGCGCUGAGGUAGGCCUGCUGUGCGGUGCUUCGCGUUGUGAAUCGAGGUGUAGCUUACGCGAUGGUGGCGGUCGUGAGAUGACAUUUUAUUUUCCUCGGUGGAUCUGAAUUUUUGGGAGUGGAUUGGAAGUUGAUUAUAUGUUUUAACUGCUGGAAAUAGGUAAGCUCUACGGACUCUUAAGCUACUAUAAGUUGUUUAGAUAACCAUAACAAAUACAUGUUUCAGUACAAUAUAUAUAAACAAAAUAUGGUAGUCAAUUAUCUAUUUCUGAUACAUUGAAGCAUGUCUCUGACAAUUUGGGGCAUACUGCUCUCACAUUCAUUCUCUUGGUACGUCAACAGCUCUACUAAAAAAUGCUUCCUUAGCUCGUAUUCAUCUUGUACAUGCAUUUAUUUAUGCAAGUGAUCAAGGUUACCACUGUAUGUGUAAAAAAAUAAUAGCAUUUAAAUGAUAAAUUCUAGUGUCAUGAUACUUUGCCUUUGUAAUUGGUAACUGCAAUUCUUCAUCAUUCCAUUUGCACAUGAAGAGGGACACAAGAUAACCAGAUAGUUCGCUAAGAAGAUUGAAUUGUUAAUUAAUUUUGUGUUAGGAAAUAAAAUAACUGGUGCUGCGCAUACCGCUCCCUAUCUCUUUGUCUUUUUCAUACAUUGGGAUCCAAGAGUGGGGAUGGUGAUGCAGACAGUGUGGCACCAACAUUAAACAUGUGGGAUGGAGCCGGUAAUCAUAAAAAGAAUUAUGUACUCCCUCUGGGUUGAUAAUACUUGUCGUUUGGACAAGGGCACGGUCUCAAAAAAACAAAUUUGACCAUUAUUUUUUAUUAUAAUAUGUAUAAAAGUGUUAACAAAUAUAUGAUUUUAUUAAAGUACUUUUUAAGACUAAUCUAUACAUGUAGUCAUUAUAUUUAAAAGACAAAUAUUUUAAAAAUGAUUCAUAAUCAAAGAUUCUAAAGUUUGACUUCACCCUUGUCUAAAACGACAAGUAUUAUCAGCCAGGAGGGAGUAGAUGAUUUCGUACUUCCAUCUCAAUAUUAUAAACAUAGUCCAUCUUAAAUUCCAUCUUUUUUUUCAUGAUUGAGUUAGUCUUUAGCACUGAAUCAUUAACAUUGUUUUGAGCACUGAAAAUAACUUAUUUUGCUGCAGCCUAGUUGUUAAAGACAUGUGCACCACUGAUGAUUUCCGUACUUCCAUCUCAAUAUUAUAAACAUAAAGUCCAUCUUCUUAAAUUCCAUCUUUUUUUUCACGAUUGAGUCAGUCUUUGUUGGGAGUUUAUGCAGGGUGCUUAGAAUAUUUGGUACUAUCCUUUAGAAUCAUUACACAAAUGCAACAGACUAUUUUCUGUCUUUGCUGAUGAUUGCUAAUGCAGCUCGAACUUAUGGGAGUAAAAAAGCCCUGAGAAUACUUUGCGUAUGCAUCUUGUUUGAUCGGGCAUUUUUCUUUGAUGCAACUUGAGUUUAUGUUUGUUGAUGACUGUCGUUGAUGGAGCUGCUCCUGCCAAGGUGGCCUUUUUGGCGAUGGAGUAGAACUGUCUGAAUUUUUUUAUCACACCACAAGAACGGAUUUUGUUUGUGGUACCAUUUUUUGUAUAUAUAAAACAUAUUUUGGUUGUAUAUAUAUAGAAUAGGAUGUAUCUACCGUUCUUGUGGUGUUGUUCAUGUGUUUGGAUGUAAUAUGGGGUGUCCUUGUGGUGUUUGGAUAAGGAUCUGUUGGAGUGGGCCUAAAUGUGCCAUGGGCCUGAACAGAUCUGGGGAGUAAAAUUGAGCUACGUGCUAGGGGAUCUGUUGGGGUGGGCCUGAAUGUACCAUGGGCCUGAACAGAUCUACGGACGUGAGAGGGAAUCGGAAAUUGUGGACCGAUCUGGGAGGGAGCGAUCUGGAAGGAAUUGGACAGAAAUAAUCGCGUGUGCACUCGGGAGGAAAUCGGACUAAAAAAUCGCAAUACAGGGUAAAGACUAGAAAAAUACCCAUGCGUUGCUACGGGAGGAAAAGACCGUGGAAGCGGGCGUCGUUCUAUGGCAGAGUCCGUAAUGUCAACGAAGGAGUAAUCGUGGCGGAGCUGGUGGAGGUAGUGUCCAGACACCUUGGUGGUUGAUGGCACAUCGCCGACGAAGCUUAGUGCGGCCGACUACAGCAAGACGGCGUCAGGAGCUCUUGCCGGCAUGGCAAGGAAAAGCUUGCUGGCGGCAGCAAGAUGACGACGCACGGCUUGGGAGGGACAGAGCGGCAUGGAAUGAAACAAUUCACGUCCUUGGUGGCAUGUUUUGAAAGUGUUGCGAAUUGAGUGGCACAUCCUGAAGGUGGUGCAAAUCGAAUGGCAUCUUCUAAAAAUUCUCCUAAACCAUUUGUAAUAUGUGAUAAUACAAAUGCCGGCAUGUUUGCAAUGGAAAAAGAUACAAUUGCGUAUGUAAAUCGGGACAUGUUUAUAUGUGUUUUUAAGUGAGACCGUCAUAAAUUUUAAUAUCGAUUCGUCAGUUCCAACAAACAUAUUGUCAUGGGCGGAUCACCCAAAAAAUUCUUAGCCUAACACAUAAAUAUACGUAUGUGAGCAGAAACUUUUGAAAAAAAAGAAGAAAAAAAGCUCGUUUUUAAUAUAUUAUGAUGCAUAUUUGAUCCAUUUAUACUUUUAGCUUUGUUAUAUAUAAGUUGGAUCACCCAUAUAAAAGUUCGAGAUACGUCAUUGGUAUAGUUAAAUCUAUUAUUAAUUAGUCAUUUUCAUUUUUAAGGGAGUAUUGUUUCCAGUUUAUAAAUUAAUUACAUUUGAGGUCAAAUAGUAGUAUUUUUUUGCCUCAACAAAUUGAUUGAGAAAUGAGAAAAAUAAAAGGAAGAGAGGUCUGGUAGGAAAAAAAAUAAAGAAAGAAAGCAGAGCACGAGAACAGAUAAGUCAUAAGUCCCCAUUUUCACUUUCUCCUUCACUUUCCCCAAAUCCAUCCGCUCUCAUCCCGUGUCCUUUACUGCUGUCUAGCUGUCUCCCCCGAUUCAACUCCCCACCACCGGUCACCUCUAGCAUCGCUGUGCUUCUUCCCUGUCUGCUACCCCACACAACAAUCCUUGAGCUCCUUCCCUACUUGCUGCGCCCCAUCUUCCUCUCGUGGCGGCAUCCGGUUAUGCAUCUGGGCUACAGCUCAGCUCAAGUAGUUGACGGGGGCGGAGUGGCCUCGGCAGCGGCGUGGAGUGGAUUCGACGGUGAUGAUCUGCUUCCGAGCCAAGUCUGAUGCCGUGCACGGCCGCCUCCUGGUUCUCUUCCGCACGCAGCCAAGGCCACGACAGCGAGCCUCAACCUUGCGUGGCCCACGAGAAGCAGGCGCAAGGCCGGUUCAGGGUGACGGCUAGGGUGCGUGCAUGGUGGUGCUAAUUCUGUGCUCGCAUCACAUGAUGGCGGUGAUUUGCCAAAUUGGGUUUUGAAAUCAUGCAACGUGCGGCCGAAGAUAGAAACCGGUGAGACAAUGAUUCUGGUGGCUGGAGUUUUGCUUUAUUUGGGUUUGGGAUCUAAUUCGAGGAAAAUUUGGAAUUUAGGGUUUGUGCAAAUUGGGUAUUUUUUCUAGAACCAAUUUUUGUAUUUUUGUAUGUUGUAUAUAUGCAAGUUGUCCUAGUGUAACACGAACCGGUUUAAAUUUAGCCCAAUUUAUGUAAAAUCCUGAUCGGAACCGAUUUGGUG

Sequence
(XR_003238351.1):

CCAAGUGACCACGUUAUCUCUCGUUCUCUCUCCUUUCUUCUCUCGUCUGCUAGCUCUCAUCUCCUGCUCUGGGACACACCAUUGCAGGCCAGAGCAAUGAAGAUUAGGUUUGUCCUUCUAGAUCCGGUCUCUUCCCCCUCGCUCCUGUCACUGGAUCGGGAGUUGGUCGUCGCGGGGCUGGGGUUGAGAGGAGGGGUGGGGGAGGGGGCGGGCUGGUUGUUGUAGAGAUACGGGGGGUGUCACCAAUAGCGCCAAGAAGGUUGAGGGGAUGGAGGAGAUGUGGCGGUAGCGGCCGGCGGUGAUGAAGAGGUGGCGGAUUUCCUCCCUGCACGCGUAUCUCUGUCCUCUGAGUACAAAUUUGUGGUGGCUUCCUUUGCCUUCUCCUACAGCGACCACCACCCUCCUCCUCAUUUCUCCCACCUCGAGUGCGUCGCUGCUGUCACCCAUCCAGAGCGAUGAUCCAACCCCGAGGCCUAGACUUUUGUAUGGAUACAAUGUAUUAUGUCGAACCACAACCUUUGUACAGCGCUGAGGUAGGCCUGCUGUGCGGUGCUUCGCGUUGUGAAUCGAGGUGUAGCUUACGCGAUGGUGGCGGUCGUGAGAUGACAUUUUAUUUUCCUCGGUGGAUCUGAAUUUUUGGGAGUGGAUUGGAAGUUGAUUAUAUGUUUUAACUGCUGGAAAUAGGUAAGCUCUACGGACUCUUAAGCUACUAUAAGUUGUUUAGAUAACCAUAACAAAUACAUGUUUCAGUACAAUAUAUAUAAACAAAAUAUGGUAGUCAAUUAUCUAUUUCUGAUACAUUGAAGCAUGUCUCUGACAAUUUGGGGCAUACUGCUCUCACAUUCAUUCUCUUGGUACGUCAACAGCUCUACUAAAAAAUGCUUCCUUAGCUCGUAUUCAUCUUGUACAUGCAUUUAUUUAUGCAAGUGAUCAAGGUUACCACUGUAUGUGUAAAAAAAUAAUAGCAUUUAAAUGAUAAAUUCUAGUGUCAUGAUACUUUGCCUUUGUAAUUGGUAACUGCAAUUCUUCAUCAUUCCAUUUGCACAUGAAGAGGGACACAAGAUAACCAGAUAGUUCGCUAAGAAGAUUGAAUUGUUAAUUAAUUUUGUGUUAGGAAAUAAAAUAACUGGUGCUGCGCAUACCGCUCCCUAUCUCUUUGUCUUUUUCAUACAUUGGGAUCCAAGAGUGGGGAUGGUGAUGCAGACAGUGUGGCACCAACAUUAAACAUGUGGGAUGGAGCCGGUAAUCAUAAAAAGAAUUAUGUACUCCCUCUGGGUUGAUAAUACUUGUCGUUUGGACAAGGGCACGGUCUCAAAAAAACAAAUUUGACCAUUAUUUUUUAUUAUAAUAUGUAUAAAAGUGUUAACAAAUAUAUGAUUUUAUUAAAGUACUUUUUAAGACUAAUCUAUACAUGUAGUCAUUAUAUUUAAAAGACAAAUAUUUUAAAAAUGAUUCAUAAUCAAAGAUUCUAAAGUUUGACUUCACCCUUGUCUAAAACGACAAGUAUUAUCAGCCAGGAGGGAGUAGAUGAUUUCGUACUUCCAUCUCAAUAUUAUAAACAUAGUCCAUCUUAAAUUCCAUCUUUUUUUUCAUGAUUGAGUUAGUCUUUAGCACUGAAUCAUUAACAUUGUUUUGAGCACUGAAAAUAACUUAUUUUGCUGCAGCCUAGUUGUUAAAGACAUGUGCACCACUGAUGAUUUCCGUACUUCCAUCUCAAUAUUAUAAACAUAAAGUCCAUCUUCUUAAAUUCCAUCUUUUUUUUCACGAUUGAGUCAGUCUUUGUUGGGAGUUUAUGCAGGGUGCUUAGAAUAUUUGGUACUAUCCUUUAGAAUCAUUACACAAAUGCAACAGACUAUUUUCUGUCUUUGCUGAUGAUUGCUAAUGCAGCUCGAACUUAUGGGAGUAAAAAAGCCCUGAGAAUACUUUGCGUAUGCAUCUUGUUUGAUCGGGCAUUUUUCUUUGAUGCAACUUGAGUUUAUGUUUGUUGAUGACUGUCGUUGAUGGAGCUGCUCCUGCCAAGGUGGCCUUUUUGGCGAUGGAGUAGAACUGUCUGAAUUUUUUUAUCACACCACAAGAACGGAUUUUGUUUGUGGUACCAUUUUUUGUAUAUAUAAAACAUAUUUUGGUUGUAUAUAUAUAGAAUAGGAUGUAUCUACCGUUCUUGUGGUGUUGUUCAUGUGUUUGGAUGUAAUAUGGGGUGUCCUUGUGGUGUUUGGAUAAGGAUCUGUUGGAGUGGGCCUAAAUGUGCCAUGGGCCUGAACAGAUCUGGGGAGUAAAAUUGAGCUACGUGCUAGGGGAUCUGUUGGGGUGGGCCUGAAUGUACCAUGGGCCUGAACAGAUCUACGGACGUGAGAGGGAAUCGGAAAUUGUGGACCGAUCUGGGAGGGAGCGAUCUGGAAGGAAUUGGACAGAAAUAAUCGCGUGUGCACUCGGGAGGAAAUCGGACUAAAAAAUCGCAAUACAGGGUGUGAAUUGGAUUGAAAAAUCAUGCAUUACUGGGACGACGUACGAAAAAUCCCUGACAAAAACAUCUUAAACUUUUAUAAUAGGUAAAGACUAGAAAAAUACCCAUGCGUUGCUACGGGAGGAAAAGACCGUGGAAGCGGGCGUCGUUCUAUGGCAGAGUCCGUAAUGUCAACGAAGGAGUAAUCGUGGCGGAGCUGGUGGAGGUAGUGUCCAGACACCUUGGUGGUUGAUGGCACAUCGCCGACGAAGCUUAGUGCGGCCGACUACAGCAAGACGGCGUCAGGAGCUCUUGCCGGCAUGGCAAGGAAAAGCUUGCUGGCGGCAGCAAGAUGACGACGCACGGCUUGGGAGGGACAGAGCGGCAUGGAAUGAAACAAUUCACGUCCUUGGUGGCAUGUUUUGAAAGUGUUGCGAAUUGAGUGGCACAUCCUGAAGGUGGUGCAAAUCGAAUGGCAUCUUCUAAAAAUUCUCCUAAACCAUUUGUAAUAUGUGAUAAUACAAAUGCCGGCAUGUUUGCAAUGGAAAAAGAUACAAUUGCGUAUGUAAAUCGGGACAUGUUUAUAUGUGUUUUUAAGUGAGACCGUCAUAAAUUUUAAUAUCGAUUCGUCAGUUCCAACAAACAUAUUGUCAUGGGCGGAUCACCCAAAAAAUUCUUAGCCUAACACAUAAAUAUACGUAUGUGAGCAGAAACUUUUGAAAAAAAAGAAGAAAAAAAGCUCGUUUUUAAUAUAUUAUGAUGCAUAUUUGAUCCAUUUAUACUUUUAGCUUUGUUAUAUAUAAGUUGGAUCACCCAUAUAAAAGUUCGAGAUACGUCAUUGGUAUAGUUAAAUCUAUUAUUAAUUAGUCAUUUUCAUUUUUAAGGGAGUAUUGUUUCCAGUUUAUAAAUUAAUUACAUUUGAGGUCAAAUAGUAGUAUUUUUUUGCCUCAACAAAUUGAUUGAGAAAUGAGAAAAAUAAAAGGAAGAGAGGUCUGGUAGGAAAAAAAAUAAAGAAAGAAAGCAGAGCACGAGAACAGAUAAGUCAUAAGUCCCCAUUUUCACUUUCUCCUUCACUUUCCCCAAAUCCAUCCGCUCUCAUCCCGUGUCCUUUACUGCUGUCUAGCUGUCUCCCCCGAUUCAACUCCCCACCACCGGUCACCUCUAGCAUCGCUGUGCUUCUUCCCUGUCUGCUACCCCACACAACAAUCCUUGAGCUCCUUCCCUACUUGCUGCGCCCCAUCUUCCUCUCGUGGCGGCAUCCGGUUAUGCAUCUGGGCUACAGCUCAGCUCAAGUAGUUGACGGGGGCGGAGUGGCCUCGGCAGCGGCGUGGAGUGGAUUCGACGGUGAUGAUCUGCUUCCGAGCCAAGUCUGAUGCCGUGCACGGCCGCCUCCUGGUUCUCUUCCGCACGCAGCCAAGGCCACGACAGCGAGCCUCAACCUUGCGUGGCCCACGAGAAGCAGGCGCAAGGCCGGUUCAGGGUGACGGCUAGGGUGCGUGCAUGGUGGUGCUAAUUCUGUGCUCGCAUCACAUGAUGGCGGUGAUUUGCCAAAUUGGGUUUUGAAAUCAUGCAACGUGCGGCCGAAGAUAGAAACCGGUGAGACAAUGAUUCUGGUGGCUGGAGUUUUGCUUUAUUUGGGUUUGGGAUCUAAUUCGAGGAAAAUUUGGAAUUUAGGGUUUGUGCAAAUUGGGUAUUUUUUCUAGAACCAAUUUUUGUAUUUUUGUAUGUUGUAUAUAUGCAAGUUGUCCUAGUGUAACACGAACCGGUUUAAAUUUAGCCCAAUUUAUGUAAAAUCCUGAUCGGAACCGAUUUGGU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

36

LEP:

7.32%

ME_num:

361

MEP:

73.37%

HE_num:

94

HEP:

19.11%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

carpel

Tau :

0.64

Avg Expression:

7.24

Tip: OSA-LNC9267408 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN1.920542900969152.81310927108826e-28
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN1.748778179334912.31567091422018e-23
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN2.37723686794035.33806798959282e-46
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA1.414638929747675.10100391087355e-09
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN2.389146005434065.36223398670406e-46
6Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA1.31974838018791.98376172029431e-11
7Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA1.412136522316785.26968376349986e-16
8Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA1.24827006664222.0089610395934e-14
9Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA1.089070548638481.11385957402415e-07
10Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA1.727479881779421.47474258380211e-23
11Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN1.910454717959771.58830056598883e-33
12Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2"1.905214271217660.00129400332584715
13Nipponbare // leaf // control--/--Nipponbare // leaf // drought1.905139787717750.00133071669322333
14Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1"1.905021989569470.00130226650448054
15Nipponbare // panicle // AM--/--Nipponbare // panicle // PM2.713542901951615.5361462056759e-18
16Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA1.552418999431152.32643089686173e-16
17Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day1.039721267802920.000417445594400999