Chr:
Chr5
Start:
10266448
End:
10269437
Strand:
-
Ref_name:
LOC9267359
Sequence
(XR_001545802.2):
CAGACAACCAAAGCCGUCCGUGCCACCAUCACCUCCCCAAAUCCAGUCCCCACUCUCGCACAGUCGCACUCGCACCCUAAUCCCUCUCAGCCUCUCCCACGCGCCGCCGCCGCCGCCGCCUUGGCUCCUCCGCGCGGUAGGCUGCAACCUGCAGCUCGUCGACGCCGGCUUUGAUUCCGAUCGUCUCACCCUCUCCUCUCCUCGCCGCACCAGAUCCGCAUCGGCAUCGUUGGCUAGGCAUGGAGAAUGGGGAGGGAGGAAUUGUACUCGUGCCUGUCGGUGCCUCGGGGUGGAGUAGGAUUAAUCAGAGUUGGGGGGUGCUCCUCGUAUCGUUGUCGGCUACUCGGCCCUCUGACUUUAGCAGUUGAAGGUGCUGCCGGCGGCGAGGUGGUCGAAACCUCCUCGGCGGUCAAUGCUCCCCUCCACCACGCCCAGAGAUGCGCAUCUCUACCGUGAGGGAGGAGGGCACGCCAGCUGAGGAGACAGGGACGGCGACCGCAACGGCCAUCCUGGUGGAGGUGGUAGUGUACGAAGGAGCCGUGCAGCACCAUAUCCUCACUGUCCCUGCAGUUCCCCACACGAGCCUGUUGCCUCUAUUGCUGUCCUGCGACGCCAAGACAUGAAAAGAGGCGCCGACACCCUGCGAUGGCUACUUCUCCGUCUGAGUCUGCGACCUGCCUCUUGCUCCACUUUGGUACCACCACCACCACAUUCCCAUGGCCAGUGCUGGCCUCUCAUCCUCCCUACCUGCCACUGCUGCUAGAGUGCUCGGUAAGUUCUUCCUAAAUAUACCGACGACGGGUGCUCAUUGCCAAAUCUUCAGCACUAAAUAUUAUUAGGUUGGUAGAGUAAUAAUCUCCUUUCAGCACUUAUCUUUCAGAUCUGUGUGUACUGCAUGGCAUUAUUUUUCCUAGGUGAGAAGUGAUAUUAAACUUAUCUAAAGCCAUCGAGCAACAAACUUAUACCACUUCCUAAUUUUGUCCAGCUGUUCAUAUGUCACACUCUUUAUAUCUGAAGCUGUUUUUGUAAAGGCAGUGUUCUAUGAUUAUAGAAGUAACUAUUUAUUCAUUUUCUGGUAUAUGUAUGACUCCAUGUUAGCUUGACCAACAAUAAAAUGGAUUUACACUUAUGAAUAUUUUCACUGUAUUCUUUUUCUUGAUAGGAGCGCAAUCAACAAUAGAACCGUGUUGAAUGUACCAGACAAUGGUAUGGCCAUGCAGGUCCCAUGAAUAUAUUCUUUUUGCUACCAGCUAGAGGGAUCUGAUGUACACCAGUUCCAUCAGAUACUCACCUGCGCUGUUCAGGUUUUCCUAGUCAAUCGGCUUAUUUGCUAUGUUAUGAGGAGUGGUCAAACUGCCUAUGGUGCCGUUCAUAUGAUGUUUUCUUCUGUUUGCAAGAGUUCCUGGUUGCCCAAGCUUGUUGGUAGAGGAAGUAAUGCUCAAAUUCAUCUCAAUUGUAGCUGUUUCUGAGAUUGGUAUUUCAAUUGUUCCAUAUUAGAUUGUCAUCAAAUUGAUUAACUGAACAUGGAUGUCAAUGCAUUUCAAUCCAUUCUUCUGUGUUGAUGUGUGAUUUGGAUGCUGCUGUUCUGGUGCAAAUAAUAAAUGAAUAAGCAAAUAUUGCACUAUCAA
Sequence
(XR_001545803.2):
GGUCACAGACAACCAAAGCCGUCCGUGCCACCAUCACCUCCCCAAAUCCAGUCCCCACUCUCGCACAGUCGCACUCGCACCCUAAUCCCUCUCAGCCUCUCCCACGCGCCGCCGCCGCCGCCGCCUUGGCUCCUCCGCGCGGUAGGCUGCAACCUGCAGCUCGUCGACGCCGGCUUUGAUUCCGAUCGUCUCACCCUCUCCUCUCCUCGCCGCACCAGAUCCGCAUCGGCAUCGUUGGCUAGGCAUGGAGAAUGGGGAGGGAGGAAUUGUACUCGUGCCUGUCGGUGCCUCGGGGUGGAGUAGGAUUAAUCAGAGUUGGGGGGUGCUCCUCGUAUCGUUGUCGGCUACUCGGCCCUCUGACUUUAGCAGUUGAAGGUGCUGCCGGCGGCGAGGUGGUCGAAACCUCCUCGGCGGUCAAUGCUCCCCUCCACCACGCCCAGAGAUGCGCAUCUCUACCGUGAGGGAGGAGGGCACGCCAGCUGAGGAGACAGGGACGGCGACCGCAACGGCCAUCCUGGUGGAGGUGGUAGUGUACGAAGGAGCCGUGCAGCACCAUAUCCUCACUGUCCCUGCAGUUCCCCACACGAGCCUGUUGCCUCUAUUGCUGUCCUGCGACGCCAAGACAUGAAAAGAGGCGCCGACACCCUGCGAUGGCUACUUCUCCGUCUGAGUCUGCGACCUGCCUCUUGCUCCACUUUGGUACCACCACCACCACAUUCCCAUGGCCAGUGCUGGCCUCUCAUCCUCCCUACCUGCCACUGCUGCUAGAGUGCUCGGAGCGCAAUCAACAAUAGAACCGUGUUGAAUGUACCAGACAAUGGUAUGGCCAUGCAGGUCCCAUGAAUAUAUUCUUUUUGCUACCAGCUAGAGGGAUCUGAUGUACACCAGUUCCAUCAGAUACUCACCUGCGCUGUUCAGGUUUUCCUAGUCAAUCGGCUUAUUUGCUAUGUUAUGAGGAGUGGUCAAACUGCCUAUGGUGCCGUUCAUAUGAUGUUUUCUUCUGUUUGCAAGAGUUCCUGGUUGCCCAAGCUUGUUGGUAGAGGAAGUAAUGCUCAAAUUCAUCUCAAUUGUAGCUGUUUCUGAGAUUGGUAUUUCAAUUGUUCCAUAUUAGAUUGUCAUCAAAUUGAUUAACUGAACAUGGAUGUCAAUGCAUUUCAAUCCAUUCUUCUGUGUUGAUGUGUGAUUUGGAUGCUGCUGUUCUGGUGCAAAUAAUAAAUGAAUAAGCAAAUAUUGCACUAUCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
4.07%
ME_num:
MEP:
45.73%
HE_num:
HEP:
50.0%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.72
Avg Expression:
21.79
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.17937806354758 | 3.28656414867815e-18 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.06069834601475 | 2.80908009248471e-17 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.22129021172408 | 7.18407836510669e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.27097269681592 | 5.46887258554506e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.22841196304331 | 1.37488245705009e-23 |
| 6 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -1.00427717560884 | 0.0434583352411975 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.7523825828208 | 4.15613295450245e-14 |
| 8 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.62174258120098 | 8.82412432223669e-17 |
| 9 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.19808407577702 | 0.00272862311286394 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.17412778696304 | 2.07470022657921e-18 |
| 11 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.21898851296976 | 0.020631277623218 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.62387562335652 | 6.08493866583764e-13 |