Chr:
Chr2
Start:
6013992
End:
6016108
Strand:
+
Ref_name:
LOC9267356
Sequence
(XR_001543159.2):
CACUACUCCCGAUCGGUCUCACGGAUUUACCCGGCAAAAAAAAAAAAAAAACACAGCCCACACUCCCAAUCGCGUGUGCACCACUGCCUCUCUCGUCUUCGCGCUCCGCCCGUAUUGCCGUCGCCUCCACUGGCCACCGCCGCCUCCUCGUUUGCACUGCCACCCUCCCACCGCACCUCCCCAUCCGCACCACUGCUUCAAAUCGUUUCCACCGCAGCGUUUUCCGCCGCCGCCGCUGCCGUGUUUCCCCAUUGAUCCGAAUCACAGCUGCAAAGAACAGAACAAGAUCGAGAUCGACGAUGGUGGAUCGAGGUCAAAAAUCAGAUCGCAAAUUCAAGCAGAAGUACUGCAACAAGACUGUCGCCAUCUCUUCCUCCCUUGCCCACUGAAUCCCAUGAUCCCAUCCCAGAUCGGCUCAAAUAAAAGAGACGAUGCCAAAGAUGGAGUGAUGAAGAGCGAGGCACAAAUUUCUGUAUGGCUACAAUCAUGGGGGAAGAAUCAUGUUCUUUGAAUUGCAUCUGCUAUCAAUCAACAAGCUAGGGAGCUCAUAAUGUUCUGAUGAAGUUACUCGCAGAGGUGGAGCUUACCAACUUCAAAGAAAAGAAACAUGAACUAGAUUUUCUGAAACUAUUAUUCAGGGCAGAACCAUCACUUACAAGGAUGAGAAUAACCUGUCAUCAUUCGUUUGCUGUCUAGGAGAAACUACCUGAAGAUUUACAAAGUUUUGCUUUGCUUUUGCAAGCCAAGAAUAUUUUUGUUGAUGCGAAUUUCCUGAAAUGAAUGAGUUGUGGUUGAUGGCAGGCCUACAGAGAAGAGAAAACCUCCUUGGCUUGGGCUGAAGGAUUUUUGGUUGGCAAUAAUGCAUAAAUAGACAAACUACUGUAAUUGUGAUCACUCUAGAUUUUUUACUAUACUUCAUAACCAAAUUGUACAUUUUCAUUUUGGAAUGUUUAUUAUGUUAUCUUCUUGAGAUACUCGGAGGCCAAAUGAUCUUUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
70.73%
ME_num:
MEP:
26.63%
HE_num:
HEP:
2.44%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.97
Avg Expression:
30.17
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.1133465328707 | 0.0113563863026215 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.80158721793324 | 9.11094966797954e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -7.04892173095455 | 2.00925291649333e-07 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.04630221546158 | 0.000282668162731615 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -5.60480694660687 | 1.55696075869801e-06 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.7265652400522 | 0.000313855803229671 |
| 7 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 2.78846373661684 | 0.00242461625438832 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -7.86126481360856 | 8.99547400706848e-10 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.73297943959495 | 2.89084669963514e-05 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -3.00443792676445 | 2.370297658507e-07 |
| 11 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 3.7438202414195 | 0.037430469236045 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.81160030846472 | 1.12605685083184e-12 |