Chr:
Chr12
Start:
18721494
End:
18724666
Strand:
+
Ref_name:
LOC9267311
Sequence
(XR_001541952.2):
CUAGCGACCCCCUCUCCUGCGACCCUAUCGGAUAGUAAUGAUGCCGCGCCAGUGCAUUGAACCGAAACCUGGGAGAGAUCGAAACGAGGCUGCGUCAUCGAUUAAAUCACCCUCCCUCUCGCUGUUAUAAGCUCUCCUCUAGCUCGUCCUCAUCCAAAAUCAACCUCCCAUUUACUUCCCUUUCCCCUAAAACUCUUGCUCCACCAAAGGAAAUUGAGAUCGCGUCGCCGUCGGGUGUCGAACACCUGGUGAGCGAGGGGUUGCACCGCUGCCGCAGGGCCUCUCGCCCGGUGUGGGUGGCGGGAUGUGGAGAGGAGGUGCUCGUGUUGCCAUUGCUGCUGUUGGAGGGAGUCGGGAGCUGCUGAACAAGGAAAACCGGGCGUCGAACAUCUGCGACCAUCGCCGACCGCCGGCUGCCCCUUUUUCGACCACACCGCACCACGCGCCAUCAAACUUCGCCGUUCCGCCACUCCGUGAUAUCCGAGGGAAUUGUUGAGUCGAUUGAGGAGCAGGGACAGCAAGACUGUGAUCCAGGAAGUGGAUGGCAAUGAAGUCGAGGAGGAUCCCUAUGCUUAUCUUUAGGAGGAUGCAGAGGAUGACGGCGCUCUGUAGGUCUUAGUUACGGUCGUUGCCUGUGGCAAUGACAUGGCCGCUGCCUUAUCUAUUUCUGCUUUGGCAUGUAUUCCGGACCGUUCGGUCCUAUGUUCUAGUCAAUGCCUGCGGGCCUAUGAUGUAAUAAUUUAUGCUAGACAAUCUUUGUAUGUGUACUUGGUAUUUCAGCAAUGUAACAUGAGUGAUUCCUGUUAUAAAAAUGGGGGACGACAGUGCUAUGCCACGAUAUUCAUGGGAUCCAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
23.17%
ME_num:
MEP:
42.89%
HE_num:
HEP:
33.74%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.81
Avg Expression:
42.69
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.22398717600841 | 2.82091058491234e-09 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.82799944072753 | 2.88678300295663e-16 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -4.85808226768674 | 1.3514007951891e-11 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.95774644131197 | 2.62127763708489e-11 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -3.92061916281341 | 3.99316140935776e-15 |
| 6 | Taichung 65 // shoot_apical_meristem // 0_days_after_shift--/--Taichung 65 // shoot_apical_meristem // 12_days_after_shift | 1.15717197406094 | 2.24609392908278e-06 |
| 7 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 8_days_after_shift | 1.42040905552442 | 8.7039427780407e-12 |
| 8 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 12_days_after_shift | 1.67716816065441 | 4.94074191097394e-27 |
| 9 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -3.99692396204999 | 3.1004194290316e-06 |
| 10 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 4.11585170331399 | 3.05580763491728e-13 |
| 11 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 9h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 9h50 min" | 2.19097120604523 | 0.015013188279392 |
| 12 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 4.13479317236351 | 1.25943376613803e-09 |
| 13 | 9311 // leaf // control--/--9311 // leaf // salt | 2.27639029243921 | 1.45280815173989e-23 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.71677194135242 | 5.86557543805313e-20 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 1.77067858847136 | 0.0477619860662838 |
| 16 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 4.94410959680815 | 2.44083921328626e-75 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.21187079402378 | 0.000463547472741213 |
| 18 | 9L136 // leaf // control--/--9L136 // leaf // salt | 2.91673788500247 | 1.68984822928732e-16 |
| 19 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.5219163419926 | 1.56357075552811e-07 |