Chr:
Chr2
Start:
11470515
End:
11474932
Strand:
-
Ref_name:
LOC9267258
Sequence
(XR_001542906.2):
GGCCUACAGCUUUGCUUAGGUUGGUUGCACUGGGGCGUGUCCUGUGGCCUUUCAGUAGAAAAAAUGGUGGCCCGGAUGUAUCAGAACUAGGCUAGGGCCCAGCCCAGAGGGCAGUGUUGACCAGCUUUGACCACCUUACCCAACUCCUUGUGCGAUUGAGCCAAACCCCAGCAGCGAGCGCAACGGCAACGGCCUUGUUGGCGACUGGCCGCCGCCGCCCGCCGGCGGCCGGGCGGCCAGCGGGGGGUGGCUAAUGAGGGCUCCGCUGGGCGGCCAGCAUAUGCGGGGUGCGGGGGCCGCAGUCCGUAGAAGCGCGGGAAGGCUGCGACUGGGUAAGCCAGGCGCGUGGAGCGGUGGAGGCAAGCGGCGGCCGGUGGGGGAGGCGGCUGCGUGCGCUCGGUGUCUGCGUCGCAUCGAGCAUUCGAGCUGGUGGAAGGAGCCUAUCGAGGAGCUGAGCAAGCGAGCUGUGGUUCCCGAUUACUGAUUUCCUGGUGGCUGAAAAUCAGCGACGGAAGGUAUCUCAAAGAGAUUUGAAUAGCUAUUUUAACCGUGGGUGAUGUGCCACCAACCCCAACUACUUGUGGCAAUGGAAUUGUUGCGGUGGAAGAGGCUGCGCUGAACAGGUAGAAGGGGUCGUGGAAGUACAAUUGGGUUCAUUUCAUAUUGCUGGACGAGCGGAAGAGGUAAUCUAAGCAUGUUUGGAUGUCGAUUAAUUUUAGUUGUUGGUCUAUUUAGUGUCAUAUAAACGAUGUAAUCGCAUUUGUGUUUAGGCGAAGUUGUUUUCGGUUUUAGUGUUGAUCUUCUCUUCAGCAACUGGGCACACCUCAGAUUCUUACCAUCCUCCACCACCACGAACAGAUAUCAAUGUUUCAACGGGCUCGUCCCUCUAAUUAUUUAGAUUUGUUUAAACAAACUAUAUUAUAUACGAAUGAACGGUAAUAUAUAUAUAUUUGCCGGUUGCUGUCA
Sequence
(XR_001542907.2):
GGCCUACAGCUUUGCUUAGGUUGGUUGCACUGGGGCGUGUCCUGUGGCCUUUCAGUAGAAAAAAUGGUGGCCCGGAUGUAUCAGAACUAGGCUAGGGCCCAGCCCAGAGGGCAGUGUUGACCAGCUUUGACCACCUUACCCAACUCCUUGUGCGAUUGAGCCAAACCCCAGCAGCGAGCGCAACGGCAACGGCCUUGUUGGCGACUGGCCGCCGCCGCCCGCCGGCGGCCGGGCGGCCAGCGGGGGGUGGCUAAUGAGGGCUCCGCUGGGCGGCCAGCAUAUGCGGGGUGCGGGGGCCGCAGUCCGUAGAAGCGCGGGAAGGCUGCGACUGGGUAAGCCAGGCGCGUGGAGCGGUGGAGGCAAGCGGCGGCCGGUGGGGGAGGCGGCUGCGUGCGCUCGGUGUCUGCGUCGCAUCGAGCAUUCGAGCUGGUGGAAGGAGCCUAUCGAGGAGCUGAGCAAGCGAGCUGUGGUUCCCGAUUACUGAUUUCCUGGUGGCUGAAAAUCAGCGACGGAAGGUAUCUCAAAGAGAUUUGAAUAGCUAUUUUAACCGUGGGUGAUGUGCCACCAACCCCAACUACUUGUGGCAAUGGAAUUGUUGCGGUGGAAGAGGCUGCGCUGAACAGGUAGAAGGGGUCGUGGAAGUACAAUUGGGUUCAUUUCAUAUUGCUGGACGAGCGGAAGAGAGAACUCAACGUCCAGUGGCUAGUGAAUCCAAGUGAAGAUGCACCUGUUAUCCAGGCUCUGGUUCAGGGAGAAUAGUUGGGUGUUCUUGUUUGCAAGUUUGUUGUGUACCGUCUAUGCAGUAUACUUUUAUUAUUUGAUUUGCAGACAUUUUAGCUUCGGUUUCAUUAACUCAGGCAACAAUUUCAACUUAUAUGUCCAUUAAUUAUCUAUUUGUAGUGCGUGUUA
Sequence
(XR_003241025.1):
AUGGCCUACAGCUUUGCUUAGGUUGGUUGCACUGGGGCGUGUCCUGUGGCCUUUCAGUAGAAAAAAUGGUGGCCCGGAUGUAUCAGAACUAGGCUAGGGCCCAGCCCAGAGGGCAGUGUUGACCAGCUUUGACCACCUUACCCAACUCCUUGUGCGAUUGAGCCAAACCCCAGCAGCGAGCGCAACGGCAACGGCCUUGUUGGCGACUGGCCGCCGCCGCCCGCCGGCGGCCGGGCGGCCAGCGGGGGGUGGCUAAUGAGGGCUCCGCUGGGCGGCCAGCAUAUGCGGGGUGCGGGGGCCGCAGUCCGUAGAAGCGCGGGAAGGCUGCGACUGGGUAAGCCAGGCGCGUGGAGCGGUGGAGGCAAGCGGCGGCCGGUGGGGGAGGCGGCUGCGUGCGCUCGGUGUCUGCGUCGCAUCGAGCAUUCGAGCUGGUGGAAGGAGCCUAUCGAGGAGCUGAGCAAGCGAGCUGUGGUUCCCGAUUACUGAUUUCCUGGUGGCUGAAAAUCAGCGACGGAAGGUAUCUCAAAGAGAUUUGAAUAGCUAUUUUAACCGUGGGUGAUGUGCCACCAACCCCAACUACUUGUGGCAAUGGAAUUGUUGCGGUGGAAGAGGCUGCGCUGAACAGGUAGAAGGGGUCGUGGAAGUACAAUUGGGUUCAUUUCAUAUUGCUGGACGAGCGGAAGAGGGAAAAGCUAGGUCCUGUGUGUGCUCAUCUCCUGGUAGAUUAAUUCAGAGUUUCAGAAUUCAACACUUGUGGCAGCGUCCAACUCUAAUUAAUGUGUUCUAAGAAAAAAUAUCUCAAGUGCUGAACAGGACUGAGUGUACCUGACAAUUAUAGAAGUGUUGAUGUAGAAACUUUGUGGACAAAUGGUGCCAAAGUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
16.87%
HE_num:
HEP:
82.93%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.69
Avg Expression:
30.22
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.03924219427549 | 9.27310784409183e-05 |
| 2 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 1.19547758253548 | 0.00784844098092916 |
| 3 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.52725390024156 | 3.11805004522968e-07 |