RiceNCexp:Browse

OSA-LNC9267123

Function Link

Tissue-specific Expression analysis

Differential Expression analysis

Co-Expression Curve

Network analysis

Basic Info

Chr:

Chr10

Start:

19715235

End:

19719258

Strand:

Ref_name:

LOC9267123

Sequence
(XR_001540424.2):

GAGAAAAGAACGCAAUCCUACCGUUGAAUGGGCCGCACGGAUGUUAGCCUGGCUGAUUUUGUUGGCCGUAGUACAGCCCAUGUUCUGGAGAAGCUGUAAAAUGGGGUUUCGCCGCCGCCACGGCGGCCGGAAAUCGCCCAUGAGUAAAUCGCCAUGAGCUCUCCAGACCGGCGCCGGCGAGCGCCAUCCUCUCCUCCGUCUGAUUCGUCCCGACUCGAUGGCACCGCUCCAAUUUCCUCACCGCCGACGAGCUCAAUUACAGUGGUUACUUUGACUUCGGUGUGCCGCACUUUGGUGUGCUGGGAUAGAAGACAGGAUAGUAGGUGUUCAGCUCAAGCUGGUCCAGGAUUUGAUUGACAAGUGUCAAGUAGGAAGAAUGUCCAACGAUGAGCUCACUGGCAUCAACCUGUACAUUAACUGCUUGGAUGCCGGCCAAGCCUUGUGAAAGCAGGCUACAUGAGAGAUCAUUUUCAUGGAAAAAAUGAUGACUCCACAUCCACAAUCUGUGAUAGUGAUUCUGAAAUAUGAGUCAGAUUUACCUUGCUCGAAAAGUGAUACCGAGAAUCCAAUCAUUUGUGGAGUAAACAUUCACAAAUCGUCCAGCAACCAUCUGCGGAAAUGCAUGGCCAUCCAUACUAGUGAGAAGAUGACAUGGAGCAAGGUCAUAUACCCCCGGAGAUGGCCAUCAGCGUUCCUCCCGUCAAGGCGGCUGCGCCGAUGAUUCCUCCACGCUUCCAGUUCUCCCAUCUGCUUCUUGGUGACUCGCUUCCUUCUGACUGUUCUUCCUCUCUCGCUGCAGCCAUAGCAGAGCAAGCAACCAUUAUCUCGAUAGCUUCCUACAAUGCCAAAACGUUCGAUUACAAAAACAUAUAGUUUGUGUCCAUGACAAAACUGGUAGAGAGAUCACUGUUCUUAGCGUGUGCAUUUACAUGUACAACUAGGCUUUCUUUCUAUCCUAAUUUCACAUGGACGAGAAUGCUGUGCUGUUAUCCAAAAAAAAAAGAGAAUGCUGUGCUAAAUGUACCCUGUCAUGUGUUCUAGACUUCUAGCAUUUUCAUGAAAAAACUAAUCUAGUGAUCACAGAUAAUGAGACUACUGGACACUAUGGUCAUAAAACAUUUGAUGCUUAGGACAAGUUAGUCAAACUUCUUUUGAAACUUUGACCAUGAAUAAUUCCUCGAAAUUCCUAGUUAAAAAAUGGUGUAAGCAAAUUUCCCUUGAAUAGUAAUAUCGUAACAUUGAAACUUAUUGUAUUUUAUAAACUCAUUCUAACAAAAAAAUUAUAUGGUCAUAGUUUUACAAGUUUAGAAUCUUGUCCUAAACAUCAAAUCAAAUACUCCAUCCGUCCUAAAAUAUAAAUAAUUUUGGCUGGUUGUGACACAUUCUAGUAGUACGAAUCUGGACAUAGAUGUGUCCUAUCCUACUCCAAUACCUUAUAUUUUGGGACGGAUGGACUACCUAUGAUCAGAGGGAGUGUUAGUGAUCUUAUCUUGUAAGAAAAGCAAUGGAAUCUCUGGACAAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

NE_num:

NEP:

0.2%

LE_num:

238

LEP:

48.37%

ME_num:

253

MEP:

51.42%

HE_num:

HEP:

0.0%

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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10

Tissue :

shoot_apical_meristem

Tau :

0.77

Avg Expression:

3.60

Tip: OSA-LNC9267123 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01

Num.	Condition	log2(FoldChange)	Padj
1	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN	-1.75828227163782	0.0166974931542957
2	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN	-1.58464699295239	0.0255168388550419
3	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA	-2.82605715603272	0.0106576676859316
4	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN	-4.0320345717101	0.00261727482624701
5	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA	-2.06271153092054	0.0183286310348841
6	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA	-2.12593640678892	0.00270402378801802
7	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA	-3.74777456765317	0.000220257260924574
8	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN	-1.93923471467298	0.00336529955172675
9	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA	-1.64215151842329	0.0323518614652311
10	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA	-1.73095946762065	0.0043490008844683