Chr:
Chr2
Start:
23446712
End:
23448424
Strand:
+
Ref_name:
LOC9267103
Sequence
(XR_001543183.2):
GGGGGGGGGGGGGUGGGGGGGCGGAGCGCGGCGGAGAGGAGGGUUCGUGCGACGGGGAGCGGUCGGAGGCCGGCGAGGAAGAAGGCCCUCUCCCGGAGCGCACGGGAGAAUCGCGCCUUGACUAGCCUCUUCGCCUCCAUCCCACUGCUGCGCAUGUCGGCGGCGGCGGCGGCAGCAGGUCACGAAGGCAGCGAGGAUGGAGUCGGCGGACGGGGAGGACGGGGAGAAGCGCGGCGGCGGCGCUCGGUGGCGAAGAUGGGCGGCAGCUGGGGGAGAUGGAGCAGCCAUCUUGUGGCUCUGGGCCUCUGGCGUAGACUCACCAUGUGCAUCAGUUUGGUCAUCUUGUUCGUCUUUGUUUGAUGGUGAUGGAUCAUCCCCUUCAAUCAAGUAUCCCUCCUCAUUUGUAGUCUCGUUUAUUGAGUAGCCCCUUUCAGCUGGAUCAGCAGUGCCAAGAUUUGCUAAACCUGACGCUAGGCCUGAAAUAGGAGUAUCAGCAGAUUCCCCUGUAUCCAUAGACAGAAUCUCAUCACCAGUAUCAAACAGGCCUUCUCUAACCAAAGAAGAAUAGAUGUCAUGAGGAUUGGCAUCUGCACUUUGCAAGCUUGCAAAAAGUCCUGUCUGUUCAGAGUUAUCUUCUUGUGCUGAUCUUCCACUCGGUUACAUAUCUCAGACAGUGAAAUUGGAAGCUCUGGGCAUUCCAGCAUACAGAUCAUUUUCUUUGGUUGAGCUCGAAGCGGCGACUAAUGACUUCGAAGUUGAUGGGGAGAGGCGGGGAACGCGGCGGAGACACUGAAGUUGAUGUGGCCCUCCCGGGCGAGGAACCCGUGCGCCGCGGCGACAAGGUUGUCGUAGCUGGCGGCGACGGUCUCCUGCACGCGCGCGUGGGGAAGCGGCACUUGCGUGUCUCCGCCGCCGCCCUCCCCUUCUCCCACGUUGCAGCUGCCACCGCCUCUCCGCCAGCGCGCUCGCCCGCCAACGCCGCCUCGCCCUACCGACGCCCUCCCCUUCUCCCGUGUCUCCGCCACCGCGUCGCCGCCGCCGCCACAUCACCGGCCGGCUGUCGGACCUCCUCGCCUCGGCGACCUCCUCCCCACCACCGGCUGGCCUGCCAGAGAGAAGAGUGAGUGAGAGAGAGAGAGAGAGAGGAGGAAGGGACAGGCCGGCCUGCUGAUGUGGCUUGCUGACGUGGCAUUCUGACAUAUAAGGCCCACACUGACUCAGUCGCCACGUCGGAUCUAGUUUUUACUGGUUUAUAAGUUAGGGGGUGUGUUAUAUCUGGUUUUUCGGUUGGUGGAUGAUUUUGUAACUGGAUGACAAGUUGAGGGACCUUCGGUGUACUUUUUCCUUUCUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
7.32%
ME_num:
MEP:
37.2%
HE_num:
HEP:
55.28%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.76
Avg Expression:
26.08
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.35853226337527 | 0.0395671157033683 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.51017896676984 | 0.000997010575504536 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.44279395370793 | 9.46583526581898e-05 |
| 4 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -1.09732939272331 | 0.0195572227039986 |
| 5 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -1.25902008305985 | 0.00820340037977667 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 1.14926969010052 | 0.020074006573379 |