Chr:
Chr1
Start:
18728198
End:
18731113
Strand:
-
Ref_name:
LOC9267014
Sequence
(XR_001542527.2):
CUUUUUCAUACAACUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUUGCCAUGCCCGGCCGUCGCCGUCGUCGGUCGAUCUCCUCCCCUAUAGCUUCCCUCCUAGUUUCCUUGCAACAUCGGCUUCGCCUCGCUCCGGCGAGCCCAUUUUUCCUGUUUCCCCCUUCUCCCCCACCCCAUAGCAACCACCACUGCCACCUCUCUUUGCCGCCGAAGACAAGCUCUUGACUGCGCCGUUCCGGCCAACUCCUUCACUCUCUCCAACAGCCACCGCCCUCCCCGGGUGUGUCUUGCUCGGGAACAUGUGUGGCCGCUGACGUCGCCGCCUUCCAACCGCCGGAAAACCGGCGCCCACUCUCUCCCUCUCCUCUGUAACCGGCAGGAAGAAGGAGAAGAAGAGAGGAAGAAGAAGACGAGAGAAGGAGAGAGAAAAAGAAAAGAAAAAGGAAAAGCAUUGACAGUAGAGUCUAUUUUGGAUGGCAGCCUGUGAUAUUUCGAGAAUCGGAUAAUCAGGUUGCCUAUCUCGGAUUUAUUUGCGUUGGAGCAAGGCAAGUUAUUAUUCCUCCCCUUGAACAUAAUUACCCUAUAUUCUAUAUUUCUAUUCUAUGCAUUAGCCAUUCAUGAUUUUGAAUGCAUAACCUAAACAUAUAGCAAACCAGAUAUGCUAACUUUUGCUCAGCCCUGCCUAGUUAGACUGCAUAAAAAUAUAAUGAAUUUAGAUUGGGACAGUACGUAAGAUUUGGUUGAUUUCCGGGUGGCUAGUACUGUCUCAGUAGAUAUAAGUUUACCAAAUACUUAUGUCAAACGAACGAGUACGACCGCAGCUUCUAGAAUGGGGACAGACCUAGAUAUUAUGUUAAUUAACAAUGUGGUACCUCUGUACAGUGGUUCCUUUUGUAAGUCCUCGCGCAGGAGGCAAUCUUAUGCCGAGCAGGGCAUCUUAUGAUAUUUACCGAGGCGCAGGUAAAUAUACUAAUUUUCGCUCAUGAGCUGUGUGUGAUUUUAUGGAAACCUGGUUGAGAUGACAUGGGGUCUCUCAUCCAGUUCUCUCUAAAAACCCCGGGAACGCCAGAACUCCUCUCGCCGCUGAUAACAUUACGUUCAGAGCGCAUGGGGAGUAGAGUUCAUGGAAUAGGUGCCACUAUUGUUAAUAACCUAAUACUGGGCCAUGACUAAGCUAAUGAAUAUUGGCAAGUCGUGGACUGUGGGUAAAGCGUACAUCUACUGCAGUAGAAUAUUUAUGAAACUAUUCGAAUAGCCGUGCUCACGAAUUUGAGCAUCGGGACUCAUAUGGUAUUUGGUUAGAAACUUAAUUCCAGAUUUUAUUAAAUACUGUUGCAUCAAACACAUUGCAGGAUUUCUCCUUCUAUAUUCUCUGCUUUCUGCAAGUAAUCAUAGCUCUACUCAAAUACUACUAAUUCAUACAUUCAUAUUGAAUAUAAUAGCUUGCUGAGUACAUUGUACUCACCCUUGCUUCAACCCCCUUUUCAUAGUCAUUUUGGAGUUCUUAUCGAAGCCGGGAAUUCAAUCACAUAAGUUAGUUCCCUUUAAACCUAGUCUUGAAAUCUAGUAUUGUUAGAUGGUUUAACUCUAUAGCAAAACAUUAGAGUUGAUUUAUUCUAUAGCUUAUGCUAUAUUAGUUAGCCACAAGUUUGUAAAUACCCAUGUAUCUUAUAAUAAUAUCUCCUCUAGAGCCUUGUUCAAAUGUAUGCAAUGAAGAUCCAGAUUGUUGAACCUGUAUCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
38.01%
ME_num:
MEP:
51.02%
HE_num:
HEP:
10.77%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.84
Avg Expression:
6.48
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.08615690060287 | 0.0345979094503046 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 1.97855366158046 | 3.11269273595497e-05 |
| 3 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | 2.70869013992915 | 4.60133891837706e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 2.65724016419266 | 9.05027348591255e-11 |
| 5 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.179260197389 | 4.81621036481652e-07 |
| 6 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.92443933462163 | 0.00201383221148227 |
| 7 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 2.41632280555401 | 2.0679838870617e-05 |
| 8 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 2.34371467270616 | 0.0103026621190329 |
| 9 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 4.17612615950285 | 0.0010018801916855 |
| 10 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 5.69798544603729 | 2.70753582099494e-91 |
| 11 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 9h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 9h50 min" | 2.28163338504238 | 0.0292786670042429 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 3.2702717009209 | 2.38991848570603e-18 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | 1.47215583639023 | 0.00153924230895902 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 3.04857385151592 | 2.35709708751138e-26 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 4.1029950241119 | 1.91841682999207e-33 |
| 16 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 5.22823554388073 | 4.89532669474116e-41 |
| 17 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 3.3294466914453 | 5.52565080244143e-16 |
| 18 | 9311 // leaf // control--/--9311 // leaf // salt | 1.90232232156556 | 1.13695855531875e-06 |
| 19 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.57598457882601 | 0.000555634518286826 |
| 20 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 3.56135928676883 | 4.40446570946512e-12 |
| 21 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 3.03899624845915 | 2.87696839041074e-17 |
| 22 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 2.07556951223823 | 1.25389298110413e-09 |
| 23 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 2.98984086464289 | 1.12141326485724e-08 |
| 24 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 2.73154359839352 | 5.06771068293444e-06 |
| 25 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 5.95765174915029 | 0.00845216894183904 |
| 26 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 2.95687125331989 | 1.21849538456875e-15 |
| 27 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 5.9575883273955 | 0.00849493635594161 |
| 28 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 5.95743616453947 | 0.00847975729749163 |
| 29 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 6.235411432009 | 7.81734708065284e-06 |
| 30 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.45418908289255 | 0.00287934025084858 |
| 31 | 9L136 // leaf // control--/--9L136 // leaf // salt | 2.89306882135387 | 2.17567111694236e-11 |
| 32 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 4.92694027079039 | 7.90560250763404e-07 |