Chr:
Chr9
Start:
14250533
End:
14252231
Strand:
-
Ref_name:
LOC9266981
Sequence
(XR_001539679.2):
AAUUCCUCGAUUCUUCCGCCCCGCUCUUAUCCUUUCCCUUUCCUUCUCCAAUCUCCACCGCCCGCUUAUUUCCUUAUCUCUUCCGCACGCGCUCCUCUCAGCCGGCGACGCCAUCCCUCUCCCUCCACCAACGACGCCGCUCCCCCUCCUGCUUCCCUCACCAAUGACGCCGCUCCCCAUACCCCUUAGCCGCCCUUUCCCGGCGGCCGGCGCCCUAUCCUUAUCUCCUCGUUUUUCCCGAUCAAUUUCUCUUCCUCUCACUCUCGGUCUUUCUCUCCUCCGCUGCUAGUCCUCUCCUCAUUGCGCCUUCUUUCCUUUCCCUCUUUUUCUUCUUCUCUCCACACUUCCACAGUCGACGACACCCUCCAUCUCCGUCCCUCCCACUCCCCCCACGGCGGCGUCGCUCCCUGUACCCCUCAGCCACGGCGCCCUCUCCCCAGCCGACGGCGCCCUUCCCCUGGUAGCGGCGCCCUACCCUUGGCGGCCAGUGCCUCCGCCGCUGCGCCCUGCCCCCGGCCGGCGGCGUCUUUCACCCGGCGAGCAGCGGUGCGCAACGGGCCGGGGAGCGGCGGCCCGCGACCAACUCCUCGGUGUCGGCGGCUCUCUCCUCCCGCGAGCGGCAACGUGCGUCGGCGCCUCUCCGCCCCUCACCUCCUCUCCCUUGCCAUAAUGCCACGGGAGGGCUCGACGGUGGCGGGCGGUGGCAGGCUGCGGCGCCGGCCCUUCCGGCGGGUAGGGAGGCGGUGGGCAGGGGCGGUGCCCUCCCCUCCGCCGGAUCCAGCGGGAGGGAAGGGGCGGCGGCCGGGCAUCCCGGAUCCAGCGUGAGGGGAGGGGAUGGGAGGAGAGGCGGUGGCGACCCGGCGGACGGCGUCCCAGCGGCGGCGGCGCCCUCCCCUCGCCGGAUCCAGCGGGAGGGGAGCCAGCGGCGGCCCGACGGCGACGGCGGCACCCUCCCCUUCCUGUGUCGGCAUUUUUUUUGUUUUUUUAGGGAAAGUGUCGGUAUUUUCUUGUGUUCUUGUUGAUAAAAAUCUGUUCAAUCUGUUCUUGUCUUCUUGUAGUAGUGUUUUUUCUAGGAUUUGGGUCCAAAUUUGAUGCGUACUCGGAUUAAGGCGCACGGGGGUAGGCUGUGAAGGCCAGUACCGAGGUUGCCACCGUGACCUUUUUCUUUCUUCGUUUUUUUUUUACCAUCGGAUAAGGGUUGAAGCGGGAUAGAUCGCACGCGCGCGUAGGAAGGAUUUUUUUUGUGACGGACGAAACGGACGAUCGGAAACCUUACGAAUUUUUUAAGUAGGAGGGGGAUGGAGGCUUGGCACAUGGUGGCAGUGGGUUGAGGCCGGUCGGCUCAGUAGGGAAGGGGAGAGAAAAUCCACCGGGAGAAAUAAAAUUGAUUCCUAAAAGAAGGGGCUGAUUAAUAGGUAGUUUUAAUUAUUUGGGUGAUGUGUUUCAUACGCUUGGUGAGCAUAACAGGGAAGGGAAAUGGGCAACUAAAUAUCCUAAAGGCUACUGCACAAUCAACGCAAUCAAUACAACGCUGCCUCAUAUAAUGAAAAUUCGUAACAUGAAGCGGAUCAUGCUCAAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
18.7%
ME_num:
MEP:
11.99%
HE_num:
HEP:
69.11%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.82
Avg Expression:
76.78
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.87708456410276 | 5.32721146439391e-27 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.3307893632018 | 6.68260766085624e-25 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.15409808571574 | 2.98753481091754e-32 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -3.12962119717692 | 3.70086086416491e-20 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -3.00543303848995 | 1.00278871208223e-25 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.74403233761834 | 5.81522190489469e-25 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -3.20712846534108 | 5.53944716578127e-42 |
| 8 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.01719160774731 | 0.000293555614407316 |
| 9 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.1065087483265 | 0.0260054383873393 |
| 10 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.12946538941055 | 7.23859101591381e-08 |
| 11 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 1.24416207408726 | 3.10186401261942e-05 |
| 12 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 2.18855204473772 | 0.000362912640855941 |
| 13 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 1.68167109530638 | 0.0151957609233315 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.12735302253525 | 1.97163136749567e-08 |
| 15 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -1.05371864686528 | 2.53935740341644e-06 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.68267287773589 | 6.05890904396657e-30 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.79496999190192 | 4.44962187552064e-34 |
| 18 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -3.33781935223524 | 1.61369021381974e-33 |
| 19 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.80882424668487 | 1.37050490518442e-38 |