Chr:
Chr11
Start:
5773421
End:
5777564
Strand:
+
Ref_name:
LOC9266905
Sequence
(XR_001541268.2):
UUUUAUUAUUUUGCUGAGAUAUAAUUGUCACGUAAGCGCCCCGUCAAUGCCACGUGGGACGGAGACCUAGUCAAACAAGCCACGUAUGAGCCAUGUCAGCCAAAACAGACUUCAAAACUGCUGAGGGACCACGUUUGCCUGGUUUUUAUAAGUUGGGGGACAUGUCAUACCCGGUUUUGCAGUUAUUUGCCACUUUUGUGACAUGACAAUUAACGAUUUGCCACACUGUAUCUAUGACAUAUGGGCCCUCAUGUGUCUAUAACAUGUGGGCCUAGUGGUAAAUCGUUAAGCACCGAUCGUAAGAGUGGCAAAUAGUUAAAAGACCCGACAAAUAAGGGACAAAUAGGGGAAGGUACCUAUAGUGAACUUAUUCCAACUCGAAAAGCCCAUCCUUCUGUCCAGACUCCAGCGCCGCCGCUUUCCGGCAGCGCCGACAACGCCGCCGCUCUCCCAAGCGCCGGCUGCCGCGCCCCACUCCGGCGACCCCCCCCCCCCCAACAACCACCCCGCAGUCGCCGCCACCCAGAAUUGGUCCCGCAGCUCCCCGCGAAUCCGGUCCCAAGCUAACCCUAGCCGCUGGCCUCCUCCUCUGCUGCUGCUGCUGCUGCGACUCCCUACCGCCGCCGAGAUGGCCGGUGCUGAGCACCGCGCAACUCCUGUGGCGUACGGUUGGUUAUCUAUUCCAGAGGUAGCUUCUCCUGAAAUUGGUUAAAGUGUUUCUUCUCCUCUUGGAGCUUGGUUGGCACCUGGAGUAUCAGCCCUUCCUGGAACUGAAUCACCUUCCUGAUCUGAAGCUCCUUGCUCCACUUAUAACUCAGAAAAUAGCAAAAUACGCUUUCAUCACUGAAGGUCCGUCGCGAAGGGAUGCAGCAGGAUACGGAUGGAUUGACGGCCCAUACUGAUUAUAUUCAAGUGUAAAUUUCCCUGAAUAAAACCGUAACAGAAGUCGAGGACGAUGGACGACGACCUGACAAAAAACUCUGCUGAAUAUGACAGCUUCAUUCAUCCUGCAGAUCAAAAGAGCGGGUUUCGUCAAAUAAUUAGAAAUAUACUGUUAAAUAGUACUAUCAAUGUUGUCUCGCAGCAACAAACUGUGAAACGAAAGGCAACAGAACUAGCCUGGAGUGAACUUCUAUGAUCUCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
19.31%
ME_num:
MEP:
52.64%
HE_num:
HEP:
27.85%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.62
Avg Expression:
8.39
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.4798780752914 | 0.0283087784354097 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.91927138740552 | 0.00638756852360173 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.6064331789635 | 0.0012193889941104 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.66152261004279 | 0.0258096697646889 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.96965019429428 | 0.00801106764876517 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.66259636914195 | 0.0125027013289061 |
| 7 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.29209852139586 | 0.00350606801383485 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.98261728752772 | 0.00320119995718347 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.24003124869473 | 0.0399691163618225 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.48711189841976 | 0.0379256493611558 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.38221880240913 | 0.025510714072728 |