Chr:
Chr9
Start:
21768551
End:
21770936
Strand:
+
Ref_name:
LOC9266836
Sequence
(XR_001540185.2):
GCAUUUCAAACCGCCGCUGCCGGCGCUCGUCGCCUCGCCGCGGCGUCGUCACUGUUCCGGCUCGUCGCCGCGCGCGCGCGCGGCCGCGCGGGGCUCUCCCUUGCUCUGCCACUCUACUGCCAUGGGCGACCGCUUCCUCUUUUAUCCCCUUGUGUCCUCCUGCAUGGCCUGGCCUGGACUGGACCUGAGAGUUGCUGGUGGCGCCGCCGGCACGGCGCCUCCUACGUGUUCGACGGAAUGCCCAAGCCGUUUCACCCCUGCUGGUGCUGCAUCUACCUGAUCCAUCGUACCAUUAAUUAGCCCGGUCAGUGGGAAGUGGGAACGGUAAAAGAGCACCUGCGCUGUUUAAAGGUUUGGAGGUUUGGGAAUGGAGCUUGCCGAUGUAGCUGGUGAAGAAGAAGCUAAAAGCCAAGGUGAUGGAUUGUGGUCUAAUUACCUAGACAUCGAGCAUGUGAAAACUGUAUCCCCUGAGACAUAAAACAGAUGUGCCAGGGAAUGCCAUCUGAUAGCUGGCAUGGUGAAAACAUGAAGCAUCCGAUACUUGGAAACGGUUUGUCCCUUACUUCUACUCUUUUACAUGUAUAUGUAGCAUGCUCAUUCUGUUAAGAGUAUUGAGGGUAUUAUAGACAUUUCUACUUCUCUUGUACAUAUUUAUAUGCUCUUUGAGCUAAGUCAAUUGCAAUAGUUGAAAUCCCCAAUUUCUAUCUUCUCUCCAAAAGUGACAUGGUAUCAGAGCAAGGGAGCAAACCCUAGCCGUCGAUCCAAGUCCACGCCGGCACGCCGGCGGCGGCUCGCCGCCGGCAAGCCCAACUAACCCGUCCACAUCCUCAUUGAGUAGUAGUAAGUGCAACAGCACCGUUGUCAGCUCAGUUUCGUCCCCAAUCAGCAAAGGUUCUAGCAGCAGCACCACUUCCUCGUUCUCCUGUCAUCAAGUCCAUCGACAGCCCAUCGCGGCGGAAGUCGCGGUCAUCGCCGCCGGUCGCGCGCCAUCCGUGCCGCCCAGAUCUGGGCCGCCGCCCGCCGCAUCAAAGGCAGUCGUCAUCACUGAUUGUUGCUUUCUCCUCUUCAAGCGGCAGCAGCAGCGAGCCUGUCGUUCUCCAGUUCAUCUCCAAUGAGCAAACAAACAGGAGCAGCAAUCAGCCAAUCAGUGCCCCCGUCGUGGGUGCUCGUCCUCCGCCGGCCAGGCCCUCGUCGUCCAUUGCGGCAAGCCGCUGCCGUCCACCCAUCGAGCCGGCCAGCCGCCGAUGCUCAUCGUCAUCAUCUUCUCAUCGUCCCAGGCUAUUCCUGAACUUCAGAUCCACAUCAACCCCUCUCUCCGUCUUUGUUUUUCUGUUGCGUGUAUGCUCAUGGUCAAGUAGCAACAGGAUAGAUAGGAGCAGAUUUGAGGCUCUUGGACUCUUUGGUUAUGCAGCUGGGUUACAGCUAAUUAGUGAUUGAAGAAUGGGUUCCUGCUACUGUCAUUGUUCUUUUUGCAGCCACUACUAUCGAUAAGCCUUCAAAUCAAUUUCAUGUCUUGGUCAUCAAUUUACUAUAUUUCAUAUCAAGUCCAUCCAAGUCCAAUACUCCAAUGCAUAUCCUUUAAUUUGUUGAAUUUGCACCAGUUCAUCUCUUUUGCUACUACUUAGUGUCUGCUACUAUCAUUGAGUCAAAUUUCUCUACAAUUUAUCGAGUCAAUCCAAAUCCAUUGCUUACCCUCAAUUCGUCAAAGUCAUGCCAAUUCAUCUCUUCAUUGUCUUUUCUACAUCACCAACUCGCUGUCAGAGUUGGCUUUAAUCAUCACCAGUUCCCCGUCGGAGCUGGCCUUCAUUGUCACUUCAUCAUCUCCAUGUCGGAGCUUGUCAACAUGAUCAUCAUCACUCAGUGAAGGUCCGAAGAACAGUUUGUGAAGGGCCUUCAUCAACAUCAAUGUCUCAUCAUCAGUCAAAGGACCGAAGAACAGUUUGUGAAGGUCCAUUGUCAUCAUCAUCAUCAUCAUCAACAUCUCCGAAUCAAUGAAGAGCCGAAGAACAGUUUGUGAAGGCUCCAAGGUCCAGUUCAUUGAGAAGGGGAUACAUCUUUUCUUCUUCAUCAUCCUAGAAUUGGCACACUUCGACGACAUCAUCAAGGCUUUGGAGAUAGGCUAAUAUUUGGAUUGUGUUCUAGUGUUUAGUUUACCUUUCAAAUGCAAUGUUAUUGCAUACACAUUGCAUUUGAGUGGGGGUGUUAAGAGUAUUGAGGGUAUUAUAGACAUUUCUACUUCUCUUGUACAUAUUUAUAUGCUCUUUGAGCUAAGUCAAUUGCAAUAGUUGAAAUCCCCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
23.37%
ME_num:
MEP:
53.46%
HE_num:
HEP:
22.97%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_differentiation_zone
Tau :
0.66
Avg Expression:
18.52
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.03269535558756 | 0.0280990370581886 |