Chr:
Chr3
Start:
30026951
End:
30029612
Strand:
+
Ref_name:
LOC9266828
Sequence
(XR_003241433.1):
AAUUCAGCAUAAUUUAAGCUAUCUCCAGGUCUGAAUAUUGAUACUUUUCGAAGGUACAGGUCACCAGCAAUUCAGCAUCUUGUAUAUGUGUGUUCUCGUCCUGCUGUCGCUUAACAGCUGGGCUUACCUGACAAACCACAAUUCACACGCAAAGCAGCGAGUAAUCAGUCACCUAAAACACAACCCAUUUUUCCAUAGCUGCAGGCCGGCCUAGACCAAAUCAAACACAUCAAGGACAAUGUCAACCGGCCGUGCCGGCCAAAAGAUGACAGAUGACAAACGUGUAGACGCAUGUAUGAUCGAUCGAUCGAUCGAGCUGUUCAUCAGCCAUCAGGGCAAGCAGAAUGGUCAUCAACAACUACCAGAGGAAAGAAGCAUCGGCAAGCCAUUGGCCCAUGCCUACCUUCUCCUACUUCUUCUUCCCUUACGUAUUGUCUUGCAAAUUGUAUUUAUAAUUUUUUUGUCCGUGUGAUGCAUGCUUGCCUUGCCUUUUCUCCGUGUGAGAGAGAGCAAGGCGAGAUAUGGACGUCUCAACCAUUUCUACCUAUCAUUUUCUUCUUGGGUUUGCGUUCGCCAUGUCGUUGCUGCCGGCUAUUAAUUCAGCUCGAUGUCUGCAUAUUUCCAUGAACAUUUUCAGCCAUCUCUUGAUCAGUUUACACUUGCGGAGCUGUUGGGCAAACCAUUUAUAUGAGAGGAUAUGAUCUGGUUGCAUCCAAGCGUUUUUCUUGGGCUGGGAGAGUGCGAUGUUGGCAUGGUUCAAUCAAACCGGGCAAACUUAUGCACUAGCUAAGCAAGAUGCAGGGAUAUGCAGUAUGGUUUUGUUUGGUCUGAUUGAGCCGUGCCAAUAUCACAAGCUUGCCUGGCUUAAUUACAUGUAGUAGUGUGAGGAUAUUGGAUUCUUCCACAAGGUAUGAGAAUUGUCAUGUUGUGUAUUUGUGCUCCUUUAUGCGUGUUAUUUCACAUGCCUGCCUAUUAGAUUUAAGUUUCUUUAUGUUGUUUCAUGCAAAGCUUUCAGAAACUAUUUUGUCUGACGGUUCAAGCUUUACAGAUUUAAGUUUUGCUGCUGGUACUAGCUGGUCAAAUGGCACUAAAAGGUUUAAAACCAUGUGAAUAUUUAUGAAUAUCAAUGUAGUAGUAACAUAAAUCUUACUCCUAUCAAAGAAAAAUCCCUCAUCAGCAGCACACUAAUCCUGACGUGUACGCAACCAAACAAGCCCUGCUUCUGUUCUUCCUCUUCUUCUUUUUCACACUGUUUUUCAGUUGAGUAGUUAUCUUUCAUGCAUGCUUUGGUGUAGAUUGAGAUGUCCAACUUGAUGUGAUGAUCUGGAAAAGAAGAAGCAAUCUGAAGGUUGUCCAACUUAAGGUUUGAUGCCUUAGAUCAAAUGGCCCAGCAUCUGUACCUAACCUAGAUGAUAUGACCUAAAACCUGCAACGAGCUGUCUGAAUGUCUGAUCGAGAAGCAAUCUGAAGCCUCUUCUUUUUUCAGAUACUAUAAUGCCAUUGACCUGACUCUUCAGGUUGUGCUAUCUCCAGGCACCAUGUCCUCUCAAGGCCCAUUUAGAAAGGCCAAUCCACACGGUCCAAGAAAUGGCCCAUUAAGGGUCUUGAUGCAGAGGAUGAAGAUGAACAGUGAUCGAUAUGCUCAAAUGCAUAAGGGAGCCGUAUUGAUUCUCUGAUUAAAAAAAUAUCCAACGACUUGGAUUUAGGCCAUGUUAUAUUCACUGGAUUAUUGAAAAAGAUUAUUUACUGUAUUCUUAAAAAAUAUGUUUUUUUUCCUCAAAAGACUGUCUUCUAUUGUACUGUUUAGAGCACUUGUUUUAAGUUUGGAGUAUUUGUAAAGCUUAUUUGUUUUUUGAACGGAAGCCAGCACUAGAGCGUGCUAUUUAAUUGAAUAUAGAUGAAGAAAAAUACAACCCCUAGGAGUAAGGAAAAACUGUACAGAGUUACAUGUCGUCUAUGAAGAAAAAUUCCCCAAGUUUUUGCCUCCUCCUUUAUUUUUAUCAUAAGUCGAUAAUUCGCUAGUAAUCUUAAAUCAAACUGGGCCUUAUUCAUAAAGCAGUGUUUUGAAUAAUAUUAAAAUCAACUGCUUUUGCUACAUCAUCCAUGAUCAUCUCGUAGUCACUUAACAGCUACAGAGCGAGCCGUGCUGCCCUGUCUUUAGUGCCUUGUUUGAAACAAGCCCUUGAUGUUGUACAAGCUAAAGUCUCACUCGAUCGACAAAUAUAGUGCAGAAGAUGACAGACUAUGGGUCUGAAAAAACUGAUGAGUACUUCAUCAACAGCAAUUCACCCAAUGAGCUUUGAUAGUUUCAUGAAGGCGAUCAUGAUGAAGUCCCAAAUGCUGUCUCGUUAGCUUUUCGAUCAGUGUGGCUGAAAGAGAAGUUGUCCGGGAAUCGCGAUGAUACGUACUAAUUUGCUACAAAAGGAUAAAACAGUGCUUCUGACAACAAUGGCGUCUUCACUGUCUGUGCACUGUAGAUGAACCUGCAUGAUCAUUUGUAUAUAUACAGUUUGACGCAUCAACGCAUGGAUAUUUGAGUAAUCGAAUCUUGAGGCUUUAAGUUUCUUUUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
35.98%
ME_num:
MEP:
31.1%
HE_num:
HEP:
32.72%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.87
Avg Expression:
42.78
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 4.6058113596958 | 0.00196330627351091 |
| 2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 7h | 2.19659709327237 | 0.0472600274362836 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.45806141178983 | 0.0340428995918883 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 11.9402143658121 | 4.22462347700834e-23 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 4.173068873804 | 0.00958485663310172 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 11.1598098412266 | 1.19579543600728e-20 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 6.59404564788967 | 1.92175403161358e-07 |
| 8 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -1.76983632917002 | 0.00521019921103461 |
| 9 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -2.2577231346868 | 3.26208493731523e-10 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 1.22565450053528 | 0.000756082746775435 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 1.36910626475324 | 0.000920865240528821 |
| 12 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -1.88987829648863 | 4.61019888293275e-05 |
| 13 | 9311 // leaf // control--/--9311 // leaf // salt | -1.88260628888623 | 1.60599977351285e-07 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 11.1909408959755 | 5.11001911169271e-21 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 4.14334706263564 | 0.00416105155486758 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 1.16761699937259 | 0.00176132988833434 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 1.49714075567338 | 0.0128101578268603 |
| 18 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 5.22678467455555 | 0.0001093341479867 |
| 19 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 1.55038150013825 | 5.51286540941237e-06 |
| 20 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 5.22671295497359 | 0.000110715792045342 |
| 21 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 5.22658192515085 | 0.000109743651603345 |
| 22 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 4.68936294570903 | 0.00435486714220349 |
| 23 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -3.43627855228348 | 3.02687591152935e-37 |
| 24 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 9.46846856608189 | 8.17947592019605e-15 |
| 25 | 9L136 // leaf // control--/--9L136 // leaf // salt | -1.20798299457441 | 6.65618436966097e-07 |
| 26 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 3.84960577591675 | 0.00349409609213152 |
| 27 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 10.1650262642701 | 1.71756665165015e-17 |