Chr:
Chr10
Start:
13186548
End:
13187302
Strand:
-
Ref_name:
LOC9266805
Sequence
(XR_001540482.2):
AACUACACCCACAGACAGACAGGUACACAAAAUACAAACACUGAGAAAGAAAGAAAAGACAACUGUCGUGCAUAGAGAAUAUCUAUUGUCGAUCUCUAUUAAUGGGCAACUUGUUCUUCAUCCCCAAACAUCCUCCUCCUCCUCCGCCUCCUUCGCAUGUCCAUAGCAUUCAUCACCCUCUCUCUAAUGCUCCAUCUUUCAUGAAUGGUCCGAAUGGAUUCAUGAUGGCACACACAUUGUGCACAGAGACGAGGCUACCUCUUGAUGAGGAACAGAUGCGGGAGCUGAUGAAGACGAUCGAUAAAAAGAAGAGCGAGCAGUGAUACUAAGGUAGUGGCUCAGUGUUAAGUGUUACUCCCUCCGUUUCAUAAUAAUGACUUACAUUGUGAAACGGAGGAAGUAACGAAUAAAGGGAAGACAGGUCGGCCGUACAUAAUCUGCCGCUAGCUUACCGAAGAAUUAAUUAUAAGAUGAUCAAUCAACUCUGCAGUCUAGCUAGUUGGAGAGAAGAGAUUAUACUACUUUGUAUCGUUAGAAAUAAACAAAAGAAAACUACAAAUUAUAUCUUUGACAUGAUAUGGUUUGUCUCUGAGGUUCAUAGCUACCACUCGUUGUAAAGUGUCAUCUAAUUUAAGCUAAUUUAUGUUUAGCUAGUAUACAAACA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
23.78%
ME_num:
MEP:
21.34%
HE_num:
HEP:
54.67%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
crown
Tau :
0.87
Avg Expression:
56.39
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 6.60627964223828 | 6.09108842036904e-10 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.72433347022745 | 0.00613855911072029 |
| 3 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.46955423557273 | 0.0387709068606702 |
| 4 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.11595601974339 | 0.00028229786155796 |
| 5 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | 1.5614158428746 | 0.00427419840480144 |
| 6 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 1.64413973601462 | 0.000363978206560702 |
| 7 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 1.85729307884147 | 7.88500259701991e-05 |
| 8 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;_mock_inoculated | 1.16562257430024 | 0.0366216266729622 |
| 9 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.37430874123084 | 7.0325473845349e-06 |
| 10 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -1.3628315804913 | 0.00489707810595454 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.70620993950545 | 2.75832245410333e-05 |
| 12 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -2.40112826588517 | 1.25962130875341e-09 |
| 13 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -2.40121396228409 | 1.23282755130623e-09 |
| 14 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -2.40134985302552 | 1.27555758949487e-09 |
| 15 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.14292913265805 | 6.358620607694e-06 |
| 16 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 2.10371077456101 | 3.51796816881077e-19 |