Chr:
Chr4
Start:
32861835
End:
32864164
Strand:
-
Ref_name:
LOC9266804
Sequence
(XR_001545058.2):
AGGUAAAAAAGAAAGCAGCAGUGAUUAUAUUCCUUUAUUUUUUUUUCUCAAACGCUCUUGACACUUGAGUUAUAUAGGAGAGAAAAAAAUUAAAGCUGCAGAGGGGAUAGGAUAAGACCAAUCUCGAUUCUUCCUCCCCAGUCCCCACCAGUGCACUGCAUCUAGCCACUUCCUUUUCCCCUUUUGCAGCUGCCCAUGGAGGGAGCAGCGCAACCUUGGCCUCGUCCCCUGCGAGCCGCGGCAGUGACACCACCCGGAGAGCAGCGCCCUCAGCCUCGUCGAGCAGCGGGAGAGGCGACAGCCUCAGCACCGGUGCGAGCAGCAGCCCCGACGAGUAGCGACCUCGGCCUCGUCGAGCGGGAGAGGCAAUGGCCUCGGCACAGGCGGCGGCGACUCCGGUGAGCAGCGGCCUCAGCGCGACGGCGGUGGCGCUCCUCCGGAUCCAUGCUCUCAGGCGCAACGACAGUGAGCAGGGAGGGAGCAGCUCGUCCAUUGCGGCAGAUCGGCAGUGACCUCGAUGGAUCGGUAAUGGAUGUACGCUGACCGGUGGUCCAGAGAGUUUAUCGAGGGCGUGUAUUAUUUUUUUUGAGAGUGGCCGAAGCUAACAAGCGUAACGGUUUUAUUCGUUGUCCAUGCAAUAAGUGUAAGAACCAGAAGGAGUAUUCUACAUCCAGGACUAUUCAUUUCCACUUGUUUGAGUCGGGGUUCAUGUCAAGCUAUAAUUGUUGGACAUCCUACGGUGAGCAAGGGGUUGAAAUGGAAGAAGAUGAAGCGGAGGACGAGAACAUUCCCGACUGGGCUCAGUACGCUAGAUUUGAAGGAAAUCAAGAUUUACAUUAUGCAAUUAAUUAAAAUACAAAUUUCACCAUCUUCUUUAUGGUGAUGUUGAAGAAAAUAAAGACCCAUGAAAAUCAAGGUGAAAUCUGCACUGAUCUGCUAUAUGGUAGGUCUAACAUCACCGCAUUAUCUAGUUUUGGAGUGGCUUGACGAAGUAGUCAUGGUUGGGACGUUGGGACUGGCUCGUUUUGGUCAUGAGACCUUCACAGAUGGGAACACGUGGUCGACAAACGAACACCGAAUCGGAAACACCUGCAUGAACGAUUUGAGUUGCAUGUAAUGUUGCUUUGUAGUUGCACGAAUCUCAGGAACGUGUUUUCAUCAGUCAUUUCAUUGAAUUGAUCUCUAUUUUGAUGAGCAGCGACAACGAAAUUUGAAUGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
11.59%
HE_num:
HEP:
88.21%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.66
Avg Expression:
32.96
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.22295747386762 | 1.61382158332965e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.15735790557578 | 1.83900821892318e-07 |
| 3 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 1.1342976521284 | 0.0149641755905156 |
| 4 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.66468300155579 | 5.0303615904357e-56 |
| 5 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 2.45777832351263 | 5.0425169987615e-21 |
| 6 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 2.28834135591004 | 3.9499344749056e-17 |
| 7 | 9311 // leaf // control--/--9311 // leaf // salt | 1.69168849618026 | 9.44934507569734e-14 |
| 8 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 1.1343831146822 | 0.0146360879408393 |
| 9 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 1.1342156056906 | 0.0147032035044114 |
| 10 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 2.37735703601872 | 9.05129255724287e-118 |
| 11 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.09424097442852 | 0.000108313749906225 |
| 12 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 1.95368287167681 | 0.00292117653778904 |
| 13 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.32860113481367 | 1.6921377074506e-06 |
| 14 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.18923349181003 | 2.64886591253543e-05 |