Chr:
Chr12
Start:
13021776
End:
13025327
Strand:
-
Ref_name:
LOC9266751
Sequence
(XR_001541832.2):
CUUAUUAUCAAAAAUCUCCCUCGCUCCCGAAAUCACGCCGCAUCCUCUCUUCAGCCAACGUCGCCCACCCGCUCGUCACCGAUUCCCCAUCCACGAUUUCUCUCCUCUCCCGCGCCGCCCCUCCGUCGUCGUCGCGUGAAGUCCUGGCCGAUCCCCUCCGUCGUCGUCGCGUGAAGUCCUGGCCGAUCCCCUCCGUCGUCGUCGCGUGAACUCCUCGCCGAUCCCCUUCCUCCGUCGCGCCGUCACGCCGCCGAUUCCCCCCUCCUCGUCGGGCGCGCCGCGGGGUUCAGUCGGCGCCGAUCCCCAUCCCCCAGGUCGCCGUCGCCGAUCCUGCAUCUCCUCUGUCCCGUCCUCGCCGAUCCCCCGCCUCCCUCGCGCCGUCACGCCGCCGAUUCUCGCCUCUCCAAGACCGUUUGCUGGUGCAUGUGCAUGUAUAUGAUAACUAUUGCUCCUCGAUGACUGGGUCGCUGUUGAAGGCUCAGUUUUGGCAAGUUUUGAAUUCGAGCUCGAUGGCCGGGUCCCUGUUGAAGGCUUUCAGUUUUGGCAAGUUCUGAAUUCGAGCGAGCUUUCAUUUUUGCAUCUUCCCCAGAUCACUGCUGGUCAACAGGUCAACAAAAGAGGCAGUGGAGACUGAGGAGGUCGCCAUCCACAACCGACAACGACAACGCGACGCCGCUGCCGCCUCAAGAGCCACCGCUGCCUAUCCAUACUCACGCCACCGUUCCUCCUGCGCCGAAAGGUACUUUCAGCGAACAAGAAUCUUACUCCAUUAUAAGGAAUCAAACCAAUCGUGAAGGUAGCUGGUACUUUGAGAACUGUCAGAUAUGCAAAUCUGGCUAAAUAGUCAUCCAUGUGAAAUGCCUUAAUGAACUCUGUAUUUAUAUAGAUGAGAUAGCUCAUUUAGAGAGUACAUACAUGAUGUGGGUUCUUCGAUCCAAUAAACUCUGUAGUGUUGAUCCAUUUAUAUAUAAUUCUCCCUGUUGUGCUGAUCCAUUUAUAUAUA
Sequence
(XR_001541830.2):
AUUAUCAAAAAUCUCCCUCGCUCCCGAAAUCACGCCGCAUCCUCUCUUCAGCCAACGUCGCCCACCCGCUCGUCACCGAUUCCCCAUCCACGAUUUCUCUCCUCUCCCGCGCCGCCCCUCCGUCGUCGUCGCGUGAAGUCCUGGCCGAUCCCCUCCGUCGUCGUCGCGUGAAGUCCUGGCCGAUCCCCUCCGUCGUCGUCGCGUGAACUCCUCGCCGAUCCCCUUCCUCCGUCGCGCCGUCACGCCGCCGAUUCCCCCCUCCUCGUCGGGCGCGCCGCGGGGUUCAGUCGGCGCCGAUCCCCAUCCCCCAGGUCGCCGUCGCCGAUCCUGCAUCUCCUCUGUCCCGUCCUCGCCGAUCCCCCGCCUCCCUCGCGCCGUCACGCCGCCGAUUCUCGCCUCUCCAAGACCGGUAUUCUUGCCUUUUUGUACAAUGCAACUGUGUAUAGACAUAUCCUAGCAGGGAUAGAAGUUUCAGUUUUUUUAAUUAAUGUGUCUUGUGUGAGACCAGUGCAAGGGGAUCCACAUUGUUCUUGAUUUUGUUUUGGUUUCAAGUUUGCUGGUGCAUGUGCAUGUAUAUGAUAACUAUUGCUCCUCGAUGACUGGGUCGCUGUUGAAGGCUCAGUUUUGGCAAGUUUUGAAUUCGAGCUCGAUGGCCGGGUCCCUGUUGAAGGCUUUCAGUUUUGGCAAGUUCUGAAUUCGAGCGAGCUUUCAUUUUUGCAUCUUCCCCAGAUCACUGCUGGUCAACAGGUCAACAAAAGAGGCAGUGGAGACUGAGGAGGUCGCCAUCCACAACCGACAACGACAACGCGACGCCGCUGCCGCCUCAAGAGCCACCGCUGCCUAUCCAUACUCACGCCACCGUUCCUCCUGCGCCGAAAGGUACUUUCAGCGAACAAGAAUCUUACUCCAUUAUAAGGAAUCAAACCAAUCGUGAAGGUAGCUGGUACUUUGAGAACUGUCAGAUAUGCAAAUCUGGCUAAAUAGUCAUCCAUGUGAAAUGCCUUAAUGAACUCUGUAUUUAUAUAGAUGAGAUAGCUCAUUUAGAGAGUACAUACAUGAUGUGGGUUCUUCGAUCCAAUAAACUCUGUAGUGUUGAUCCAUUUAUAUAUAAUUCUCCCUGUUGUGCUGAUCCAUUUAUAUAUA
Sequence
(XR_001541831.2):
GCUUAUUAUCAAAAAUCUCCCUCGCUCCCGAAAUCACGCCGCAUCCUCUCUUCAGCCAACGUCGCCCACCCGCUCGUCACCGAUUCCCCAUCCACGAUUUCUCUCCUCUCCCGCGCCGCCCCUCCGUCGUCGUCGCGUGAAGUCCUGGCCGAUCCCCUCCGUCGUCGUCGCGUGAAGUCCUGGCCGAUCCCCUCCGUCGUCGUCGCGUGAACUCCUCGCCGAUCCCCUUCCUCCGUCGCGCCGUCACGCCGCCGAUUCCCCCCUCCUCGUCGGGCGCGCCGCGGGGUUCAGUCGGCGCCGAUCCCCAUCCCCCAGGUCGCCGUCGCCGAUCCUGCAUCUCCUCUGUCCCGUCCUCGCCGAUCCCCCGCCUCCCUCGCGCCGUCACGCCGCCGAUUCUCGCCUCUCCAAGACCGUGCAAGGGGAUCCACAUUGUUCUUGAUUUUGUUUUGGUUUCAAGUUUGCUGGUGCAUGUGCAUGUAUAUGAUAACUAUUGCUCCUCGAUGACUGGGUCGCUGUUGAAGGCUCAGUUUUGGCAAGUUUUGAAUUCGAGCUCGAUGGCCGGGUCCCUGUUGAAGGCUUUCAGUUUUGGCAAGUUCUGAAUUCGAGCGAGCUUUCAUUUUUGCAUCUUCCCCAGAUCACUGCUGGUCAACAGGUCAACAAAAGAGGCAGUGGAGACUGAGGAGGUCGCCAUCCACAACCGACAACGACAACGCGACGCCGCUGCCGCCUCAAGAGCCACCGCUGCCUAUCCAUACUCACGCCACCGUUCCUCCUGCGCCGAAAGGUACUUUCAGCGAACAAGAAUCUUACUCCAUUAUAAGGAAUCAAACCAAUCGUGAAGGUAGCUGGUACUUUGAGAACUGUCAGAUAUGCAAAUCUGGCUAAAUAGUCAUCCAUGUGAAAUGCCUUAAUGAACUCUGUAUUUAUAUAGAUGAGAUAGCUCAUUUAGAGAGUACAUACAUGAUGUGGGUUCUUCGAUCCAAUAAACUCUGUAGUGUUGAUCCAUUUAUAUAUAAUUCUCCCUGUUGUGCUGAUCCAUUUAUAUAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
3.86%
ME_num:
MEP:
40.45%
HE_num:
HEP:
55.49%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.74
Avg Expression:
21.88
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -3.32325788239808 | 8.27002334692069e-12 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.58417821366658 | 0.0460610602913628 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.22227265827835 | 0.0175778335792653 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 4.07793993428372 | 0.000176404605864615 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.85564988717031 | 0.015604775288685 |
| 6 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -1.13073006192502 | 0.000570598327193384 |
| 7 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -1.8983520576903 | 8.42355376913354e-08 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.59078382987129 | 0.00118654384561027 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.4809793650041 | 0.0447905188401266 |
| 10 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.55853717176721 | 0.00161085463663732 |
| 11 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.55861196363761 | 0.00166869903124531 |
| 12 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.55871318385917 | 0.00161659255824228 |
| 13 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.74679441571978 | 5.39147849809801e-17 |
| 14 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -1.11568774107933 | 0.000211279101742437 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 3.21517501704267 | 0.00715591532225721 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.72825770623209 | 0.0186270383724034 |