Chr:
Chr11
Start:
12900801
End:
12911436
Strand:
+
Ref_name:
LOC9266647
Sequence
(XR_001540974.1):
UUCUCCUCCUCCCAGCUGCAUCGCCACACCCCAUUAUCCAUUCCUAAACUGAAGAAACCAAGAAGGAGAGCUCCAUCUCCCUUUUCCAUCUCAACCUCGCCGCCGGUCGUGAAGACGACGACCGCCUCCAGCGUCAUUAAGCCGCCGUCGUUUCCUCUUCUCUUGCGUUCCAUUAUCACCUCUCCUCGCCGAUUCCAGCCCUCUAAGUUUCAUCCCAUUUCAUGCAGUGGUUUGGUGGGAACUCAAACCUCGACGAUAAUGCUCUGGAGCGCGCACUGGACGCCGCCAUCGGGACAUCGUCUUCGUUGCUGUCGAACCGGAGCAAGCCGAGCCGAGCCACCGCAUCAUCAACAUCUCCUCGGUGUCCUCUCUUAAAUCCCUCAUGAACCCCAGCCAGUGGUGCAUCGAGCUUGGAGAUCGGCAUCGUCUUCCCCAAUUCCAGCCGUCAAGCUCCACCUUCGAUUUCUCCCUCUCCGAUCAUCAGCCAUAUCAAGCCGGCGACGUCAUUCCGAAGCUCCCCGCCGUCGCCGAGUCGUUCUGCUCGCGGUCACCGCUAUCUGGACCCUGCCAAGUUUCAUUGGACGCUCGGUUUAGACUUAGUCUUUGAGUGAUUGCGGUAAUCGACUGCUUCUUAUAGGACUUGAAUUUAAUGGGGUAAAUGUCAUAAUAUAACUAGUAAUAUGCCCGUACUAACGUUACGGGGAUGUUUCAUAAGACCACUGUGAUAUCACAGAAAAGGAAAUUCCUGCUGAGAAUGAUACAA
Sequence
(XR_003239488.1):
CUUCUCCUCCUCCCAGCUGCAUCGCCACACCCCAUUAUCCAUUCCUAAACUGAAGAAACCAAGAAGGAGAGCUCCAUCUCCCUUUUCCAUCUCAACCUCGCCGCCGGUCGUGAAGACGACGACCGCCUCCAGCGUCAUUAAGCCGCCGUCGUUUCCUCUUCUCUUGCGUUCCAUUAUCACCUCUCCUCGCCGAUUCCAGCCCUCUAAGUUUCAUCCCAUUUCAUGCAGUGGUUUGGUGGGAACUCAAACCUCGACGAUAAUGCUCUGGAGCGCGCACUGGACGCCGCCAUCGGGACAUCGUCUUCGUUGCUGUCGAACCGGAGCAAGCCGAGCCGAGCCACCGCAUCAUCAACAUCUCCUCGGUGUCCUCUCUUAAAUCCCUCAUGAACCCCAGCCAGUGGUGCAUCGAGCUUGGAGAUCGGCAUCGUCUUCCCCAAUUCCAGCCGUCAAGCUCCACCUUCGAUUUCUCCCUCUCCGAUCAUCAGCCAUAUCAAGCCGGCGACGUCAUUCCGAAGCUCCCCGCCGUCGCCGAGUCGUUCUGCUCGCGGUCACCGCUAUCUGGACCCUGCCAAGUUUCAUUGGACGCUCGAUGAUUGCUUAAACGGUGAAGAAGUGAUUUAGGUGCUGACUUUUUCCGGUUACAAGG
Sequence
(XR_003239489.1):
CUUCUCCUCCUCCCAGCUGCAUCGCCACACCCCAUUAUCCAUUCCUAAACUGAAGAAACCAAGAAGGAGAGCUCCAUCUCCCUUUUCCAUCUCAACCUCGCCGCCGGUCGUGAAGACGACGACCGCCUCCAGCGUCAUUAAGCCGCCGUCGUUUCCUCUUCUCUUGCGUUCCAUUAUCACCUCUCCUCGCCGAUUCCAGCCCUCUAAGUUUCAUCCCAUUUCAUGCAGUGGUUUGGUGGGAACUCAAACCUCGACGAUAAUGCUCUGGAGCGCGCACUGGACGCCGCCAUCGGGACAUCGUCUUCGUUGCUGUCGAACCGGAGCAAGCCGAGCCGAGCCACCGCAUCAUCAACAUCUCCUCGGUGUCCUCUCUUAAAUCCCUCAUGAACCCCAGCCAGUGGUGCAUCGAGCUUGGAGAUCGGCAUCGUCUUCCCCAAUUCCAGCCGUCAAGCUCCACCUUCGAUUUCUCCCUCUCCGAUCAUCAGCCAUAUCAAGCCGGCGACGUCAUUCCGAAGCUCCCCGCCGUCGCCGAGUCGUUCUGCUCGCGGUCACCGCUAUCUGGACCCUGCCAAGUUUCAUUGGACGCUCGGUUAUAAAUGCAAUGUGAAAGGGAAUGUCACGCCUAGAAAUUCAUGAACCAGAAUUUCAAGAAGAAUGUGUAUUAAAUCCCCUAUCCAGGACAAGCCAGGGUACACAAACAACAAAGUCGAAACUCAGAUCCACGUCUUACAAAUAAAUAAUGUCUUAAAUAUGCAGCGGAAAGUGGAAGCAUCAUUUGGGGAUUGCUCUACUUCAUCGCCUCAUCUUGACAAGUCUGAAAUGAUUAUCUCCUCUGAUCAAGAAGGUCUUAUCUCAUCAUCCAUCUCACCAACAUACAACUACAAGCAAGGUAAUGAAAUGGUGAAUAAGGUUGAUGAUUGUCCAACUCUCCCAUUGUACUCCAACAACACCGAUAAUGAAAUUGCUAUAUUUGAUUGUGUUGUUGACUCAUACAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
41.87%
ME_num:
MEP:
21.14%
HE_num:
HEP:
36.79%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.89
Avg Expression:
44.62
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -7.34632467157938 | 4.40727777157876e-32 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -4.85879952887542 | 6.7554584429268e-63 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -7.59441966027628 | 1.03433478355767e-34 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -9.07694332349938 | 1.82485852521443e-13 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -7.84619853148355 | 1.60071351436165e-19 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -10.4518598551369 | 7.85908788267684e-18 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -6.83096008722914 | 2.52963725401021e-48 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.92119522804449 | 6.41523891581951e-07 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -8.90080865439317 | 4.54779629268322e-17 |
| 10 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 3.82120736887465 | 0.044132231954208 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.12199113682736 | 0.00012146611087545 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.49894523002268 | 2.93284873830618e-17 |
| 13 | 9311 // leaf // control--/--9311 // leaf // salt | 3.303441086343 | 0.00110869906346276 |
| 14 | Baldo // leaf // control--/--Baldo // leaf // 100 mM NaCl | 1.5426441564255 | 9.55980781528885e-06 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -9.88678423810143 | 2.1806773138944e-16 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -7.29903597723767 | 1.78552324339533e-46 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.05292277398212 | 0.00289188440705114 |
| 18 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 1.64655227270918 | 3.57890617033251e-07 |
| 19 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 1.64646692057864 | 3.85726952698427e-07 |
| 20 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 1.64637245028525 | 3.63847009293109e-07 |
| 21 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 5.64594963068986 | 2.90382255339254e-29 |
| 22 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.33095489497797 | 8.02924981766107e-05 |
| 23 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 4.54657995372079 | 4.70904132822851e-23 |
| 24 | 9L136 // leaf // control--/--9L136 // leaf // salt | 3.14234057341298 | 3.74748188847493e-12 |
| 25 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 2.06787118122729 | 7.81775277747005e-16 |
| 26 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -11.4614757108233 | 1.97495670863322e-21 |