Chr:
Chr5
Start:
5818067
End:
5821366
Strand:
+
Ref_name:
LOC9266622
Sequence
(XR_001545922.2):
UCUCCUUCCUCCAUCCUCCGGCGUACGGUACGGGGACUACUGGUUCCCCUCGCCUCGCGGCGGGGCGCGGCCGCGGCGGCAAUGGCGCAUCAAAUUAGGGUUUCGCUCUCACCCUCUUCCUCCUUCUCGGCCCCCACCCGGCGCGGCUCGCAAGGUGCACAUGCCCACUGAUAUUGGAGGAACAUAGAUGGUGAGGAUAAUGGAGUACAUGAAGAAUAAAGUGGGUGACAAGUGUUGGGAAGCGGGAACAUAGUGUUGGAGAGGUCUUUGAGUCCAAAGCACAAUGGUGUCGCGACUCGUGUACAGAUGGUGCAUAUCAUAUGGUGGGGGUGGUGAUGCCGAUUGAAAGCAGUGUGGCAAGUUCGAUGCGGACAUCUAGUACGGCAGCGAUUUUUCUUUUUCAAGAUAGGCACGCCACCGUGCUAGCUUCCUCCCCUCUCCCCUUAGCAGAAUCAUGCAUUUCGUACCGUCCUUGAUGACUUCUCUUAUUCUGCUGCUUAAGCUCUGCUUUGCCAUAUGCUUUAUAGCCUGCUAGAAUUUGAUACCUUGAGAUUUUUCAGAAUAAAGAUUUGCAAGACGUUCCCCAUCCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
54.67%
ME_num:
MEP:
31.71%
HE_num:
HEP:
13.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.94
Avg Expression:
96.47
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.86673310092635 | 0.015464251675775 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.93239592354901 | 0.0227588822864714 |
| 3 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 1.49588679220108 | 0.000257482436432875 |
| 4 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 4.89971850070807 | 0.0150204746323743 |
| 5 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 4.95793551544386 | 0.00678524084335833 |