Chr:
Chr10
Start:
21950667
End:
21953158
Strand:
-
Ref_name:
LOC9266612
Sequence
(XR_001540772.2):
AAAAAACUAAAAAAAUCCCAUAAAAAAUGCCAAAAAAAAAAAAACAUAAGAGUGACCACUGCGUGGGUGCCGGCAUAACCAGCACAAACCAGUCAGGCAGAAAUCACAUGUAUGUUUCGAUAAAAAAAAUCGACAAAUCAAACACGAAAUAGUCUAAAAAUCAUCACGCGCUUCACCUGCCGGCUGGAUCCAGAGAGGCGCCUGCUGCACCGCCGAUGCCGGCGGGAAUGGGAGCGGAAGCCGGAGCCGGGGGCCCGGGGCAGGGCUCUCCUCCACCCAAGACGGCGCAGCCCCCACGGCCUUGCCCCCUCCAUCGCCAGACGAAUCCAUCCCCAUCGAUCAAAAAUCCAAACCUCGGAGGGGGACAGCAGUGGCGCGGAUCUGGAGUGGCACGGCCGCCACCUUGCCACAAUCGCGCCAGCCCGGGCGAAGGAGGGGAAGGAGUCGAGAGGGAGGAGGAUCAACUCGCACUCGAAUUUCCAGCCGUCCGAUCUCUUCGAGAUUAGUGCUUCUUUUAUCAAGCUAUUUCGGUUUGGAUCCGGUUUGUUCCACCCUUGUUCGACGGUGGGUGAUGCUGUCGAAUGUCGAUGGCGAGUGGCGACGAUGGGAGGAGGCAACUCCGCCGAUUUCUUCUCGGCGACGGCCUCGCUCGUCUUCUCCAGAGGAUUCUUCUCUCGUGCAGCAACGCCACUCCGUACUCCGCUGACUCGACAAGGCAUCCCGGCGAUGAAGCAAUCUUCAGGUGAUGGGAGGUUGCUGUUGCGGCUGUGGCUUCAGCUCCUAAAAAUUAGGCAAUGUGAUGUUUACGGCCCAGAUGGGGCAAAAUGAGAAAAAGGCAUGUAUCUAAGGCAGCUAUGGAAACCGAAGAAGAUGGAACCAGCUGCGGCUACCUCGCUUUUAUUCUAAAGAAUCUGAAAAUAAUUUGGUAUUUAGUGGCUUAUGGCAUGAAUUAAGUUGAAGUGAUUAAGUACCCUCUCUAUGAUCUCUGUUUUCAAAAUAGUGAUUGAGUACCUCAAUUUCUGGAGAAACAGUUACCUAAGAGCAAGGCUAAUAAUACAUCCGACCUGUUGGCUAUAAGGUUUUUUUAGCAUUCUCUCACUCUACCCAUAUAAUAGUCAGCUAUUUACAAUUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
13.41%
ME_num:
MEP:
67.89%
HE_num:
HEP:
18.5%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_elongation_zone
Tau :
0.71
Avg Expression:
10.51
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 3.15774466650525 | 8.63438731419694e-13 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.21269645168447 | 5.39193309178053e-14 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.53694891683413 | 4.5265706106608e-18 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.42509878467359 | 4.62117751783915e-15 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.51759647266775 | 1.81016427407992e-06 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 1.51281656068248 | 0.0183188899610952 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 2.55994597783183 | 1.79362810531733e-07 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.90868058748821 | 6.42153556683279e-25 |
| 9 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -1.12694504103986 | 0.0355768787762361 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 3.12575695332508 | 2.19205512178028e-12 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.15205233866337 | 5.23150670927925e-14 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.01731533461275 | 3.03032727073825e-13 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 3.45080323799157 | 1.36468477946235e-15 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.93530052578446 | 2.80317384974009e-13 |