Chr:
Chr10
Start:
10118333
End:
10119695
Strand:
+
Ref_name:
LOC9266592
Sequence
(XR_001540245.2):
UAUUCCUACUCACAGAUCUUGAGUGAUUUUUUUUAAUUAUUUCCUAAAUAAAAUUCCCGGCCAACGGAGUCCGGAGCCGUCCAACAAGAUUGUUCCUCACGCCGGCGUGCCCCCCGCCACCGCGCGCCAUCGCCGUAGAGGCUACCACUGGGACUUCGAGGUCGCUCCUCUCUCCAUCUGGGCCGCCGCCCCUCUCGCGCACCGCGCGGCCUCUCUCCCUGCCCCUCGCCCUCGCCACCUCGCCGAUGGCCUCCGGCUGUGCGGCGGCGGCGGGAUGCUGGCUUCUCCCAGCCGAUAUCUAGGCCCUGAUCCGAGAGAUUUUGACAUGGAUCUAUGAAUAUGGCCAGCAGCACUAAAUUAAAAGGUGAGGAGAGGCUGGAUAAGCCCAAAGGGUGCCCCCACGUCUCUCCGUACUACAAUGCCGCCGAUCCUAUUAUCAUCAAUGGCAAAGGGAUUGAUCCCUUUGAGCUGAGUGAAGGUAUGGAUAAAAGAAGAGUGGCUUCAAUUCUUCAAAGUUUCACUUGAGGCAACCGAGAGAAACCACGCUGCUUCACAAGGCAAUGGCGAUUCCAAUACGGACAGUAGCAGCCUCUGGAUUCUAGAUUCUGGAAAUAAAAGAGGUAUUGCUGACCAUAAUGUGAGUAAAUGAACGAAAUCUUUUAUACUGCUGGUGUUAUCUACUUGGUUCAGAGUUUCAGACAGGAAAUUGCACCUAGUCCUAGGUAAUGUGUGAUUGUUUUGUUAGCUUUAUGAAGACAUCUUAUGUCCAAAUUGCUCUGACAGAGGGCAUUCGUCAUGCUAUCUGGCCAGCCAGUAACAUUUUCAAUUAAAAUAUCUUGAGUUUGUUUUGCAUAAGUUGUCUGCUAUGUUAAUUACCAAUCAUAAUAUAACAUAUCAGAUCCUGCACAAUGAAAGCUGGCCAGGAAAUUUGCUUUGUACUUUGUACUCACUGUCUUAUGUGGCAAUUUUUCUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
2.85%
ME_num:
MEP:
82.11%
HE_num:
HEP:
14.84%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.93
Avg Expression:
52.42
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.85853175339012 | 2.97395449214848e-07 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.91351612018136 | 6.19311603585815e-08 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.89621086201635 | 5.99349327706761e-08 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.03159821455495 | 6.09364621777092e-07 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.11259243780669 | 5.41535669190323e-08 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.55082403556647 | 3.20237352535327e-05 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.80947617828561 | 9.59924430206971e-08 |
| 8 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 1.43434157900884 | 5.50203265575304e-09 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.71835395757014 | 5.3333929279878e-07 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.6747222878226 | 3.2226081488938e-07 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.86418937871772 | 2.24284434343123e-07 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.42199338708917 | 5.65185444928859e-06 |