Chr:
Chr6
Start:
18747234
End:
18750239
Strand:
+
Ref_name:
LOC9266579
Sequence
(XR_001547054.2):
AAAACCACGCCGAAAAGAAAAUCCACCCCAAAAAGGAAAACCCUAGGCUCGCACCGCGCGCCGCCAUUUCUCCCCCUUCCACCGCGCACCGCCUCCUCCGCCAAAUCCACCGCCGCGGCGCGCGGCCUCCUCCUCCGCCGCGGCGUGCCGCCACCUCGCUCCUCUCUCCCCAUCCACCGCGCUGCCGGAGUCGACCUCGCGCCCGCCCAGGUGGUGGUGUGUGCCGGGUAGAGGAGGAGGAGGAAGCGAGGGCGUCGGACUUGUGCGUGCGCAGGUCCAGGGGCAGGACGACAUUCGACGCGGUCGCCGACGAGACAACUCAGGGACAGAUGGAGUAGUAGUUGGAGGUCCAAUAUUAUAGCCUAGGACACGAACAAAUGCAGAAAAUGGAGGUGUUGAUGCUAAUGAUCCUCGAAAUAUGCCCUUAGCUGGUGAAGAAAAUGUUCCAGGUGUUAAUAAUGUACAGCUACAAAAGAAGGUACACAAGAAGACAGCAAAGACUAACCAGCGAGCAGGCAACCAUAAAAAGGGCUAGCAGAGGUGCUGUAAAAAAAAUCAAGAACCUACAAGAACCAUAAAAGAGAUGAUUUGUUUUGUUUUUGGGACCUCAAUACACCUACAAGAACCUUAGUUACAUCUAAAUUAUGUAAUUAUUGCUAUGUACUUGAACUCUUAUGUAAUAGCUAUUUGAGCUGAUGGAUAACUGCUAUAUAGGAAUACUGCUACUUGAUGGGUGAACAAUAGUUACAUGAUGAUAUGUCAGAAUGCAUUUGUGAACAAUAGUUAUGAAUAGUUGAAUAUUGUGUUAUGCAUGUGUGUAACUUACUGAAAGGUGAUAAUCCGUGUUGCAAAAUUUGGAGUGA
Sequence
(XR_001547055.2):
AAAACCACGCCGAAAAGAAAAUCCACCCCAAAAAGGAAAACCCUAGGCUCGCACCGCGCGCCGCCAUUUCUCCCCCUUCCACCGCGCACCGCCUCCUCCGCCAAAUCCACCGCCGCGGCGCGCGGCCUCCUCCUCCGCCGCGGCGUGCCGCCACCUCGCUCCUCUCUCCCCAUCCACCGCGCUGCCGGAGUCGACCUCGCGCCCGCCCAGGUGGUGGUGUGUGCCGGGUAGAGGAGGAGGAGGAAGCGAGGGCGUCGGACUUGUGCGUGCGCAGGUCCAGGGGCAGGACGACAUUCGACGCGGUCGCCGACGAGUUUUUCCCCUUUUGCCUUUGAUUUCUUCGGCCCUUUCCUUUCAAGUUUUGAUACAAAGAAUUCAGAAACUCAUACUAUAUGAUGGACAACUCAGGGACAGAUGGAGUAGUAGUUGGAGGUCCAAUAUUAUAGCCUAGGACACGAACAAAUGCAGAAAAUGGAGGUGUUGAUGCUAAUGAUCCUCGAAAUAUGCCCUUAGCUGGUGAAGAAAAUGUUCCAGGUGUUAAUAAUGUACAGCUACAAAAGAAGGUACACAAGAAGACAGCAAAGACUAACCAGCGAGCAGGCAACCAUAAAAAGGGCUAGCAGAGGUGCUGUAAAAAAAAUCAAGAACCUACAAGAACCAUAAAAGAGAUGAUUUGUUUUGUUUUUGGGACCUCAAUACACCUACAAGAACCUUAGUUACAUCUAAAUUAUGUAAUUAUUGCUAUGUACUUGAACUCUUAUGUAAUAGCUAUUUGAGCUGAUGGAUAACUGCUAUAUAGGAAUACUGCUACUUGAUGGGUGAACAAUAGUUACAUGAUGAUAUGUCAGAAUGCAUUUGUGAACAAUAGUUAUGAAUAGUUGAAUAUUGUGUUAUGCAUGUGUGUAACUUACUGAAAGGUGAUAAUCCGUGUUGCAAAAUUUGGAGUGA
Sequence
(XR_001547056.2):
AAAACCACGCCGAAAAGAAAAUCCACCCCAAAAAGGAAAACCCUAGGCUCGCACCGCGCGCCGCCAUUUCUCCCCCUUCCACCGCGCACCGCCUCCUCCGCCAAAUCCACCGCCGCGGCGCGCGGCCUCCUCCUCCGCCGCGGCGUGCCGCCACCUCGCUCCUCUCUCCCCAUCCACCGCGCUGCCGGAGUCGACCUCGCGCCCGCCCAGGUGGUGGUGUGUGCCGGGUAGAGGAGGAGGAGGAAGCGAGGGCGUCGGACUUGUGCGUGCGCAGGUCCAGGGGCAGGACGACAUUCGACGCGGUCGCCGACGAGGUCUCCUAGUUCACUCUGCUUGUUGUUGCUGAAUGGACAACUCAGGGACAGAUGGAGUAGUAGUUGGAGGUCCAAUAUUAUAGCCUAGGACACGAACAAAUGCAGAAAAUGGAGGUGUUGAUGCUAAUGAUCCUCGAAAUAUGCCCUUAGCUGGUGAAGAAAAUGUUCCAGGUGUUAAUAAUGUACAGCUACAAAAGAAGGUACACAAGAAGACAGCAAAGACUAACCAGCGAGCAGGCAACCAUAAAAAGGGCUAGCAGAGGUGCUGUAAAAAAAAUCAAGAACCUACAAGAACCAUAAAAGAGAUGAUUUGUUUUGUUUUUGGGACCUCAAUACACCUACAAGAACCUUAGUUACAUCUAAAUUAUGUAAUUAUUGCUAUGUACUUGAACUCUUAUGUAAUAGCUAUUUGAGCUGAUGGAUAACUGCUAUAUAGGAAUACUGCUACUUGAUGGGUGAACAAUAGUUACAUGAUGAUAUGUCAGAAUGCAUUUGUGAACAAUAGUUAUGAAUAGUUGAAUAUUGUGUUAUGCAUGUGUGUAACUUACUGAAAGGUGAUAAUCCGUGUUGCAAAAUUUGGAGUGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
8.74%
ME_num:
MEP:
4.27%
HE_num:
HEP:
86.79%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.60
Avg Expression:
171.75
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.3202409129918 | 0.00690963476242558 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.33324734446862 | 0.0118167475749543 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 2.80656328177937 | 0.0186285983688834 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.31432892830983 | 0.0138969355864751 |