Chr:
Chr3
Start:
9960647
End:
9964118
Strand:
+
Ref_name:
LOC9266572
Sequence
(XR_001544002.2):
CACCUCCCACCAUCGCCUUGCCCACACUGGGAUACCACGACUCGGAUACAGAAACAAAAUCACGUGAUUUCCUCCCAACCUCCACCACGCAAUUUUCUCCGCCUUCAUCGCCGCCUCCUUCCCCUUCCGCGCGGUGCCUCCCUCCACCACUGCCGCAUCGGCUCCUGCCUCCUAUCGCCGCUUCCGCUGCUCCUGUCGUCACCGAUGCCGCUCCCGUCUUCGCCGACGACGCCGGUGACUCCCUCCACCGCCGCCUGGUCCCCGCCUCCGUGCCGCUCGCCACCACAAUUGGGCCUGCUGGUCCAGGGUUCCGUUGGCGCCACAGCCCCGUCGCCGACCAGUGGUUCAGCCUUCCGCCAGUGCCGCUGCUCCAUCGUUCUCCGGUGGUCUAGCCUUCCGUCGCGCCUCCGGUCUUGCCGCCAUUACGAGGGGCAUAGUCUGCCAUAGGUACUUCCAGCCGUGCGCCAAAAUUUCUUCUGCUGGUGAGAUCGAGUGAGACCCCAUUGACUCAAAUUGACUCUUCUGAAUCCCCAUUAGUCUUCUGUGUGGAUUCUUAUUCAGCUGAAGGGCUAUAUCCUAUCAAGGUGACUGGUGUUGCUCCAUACAGACUAACAUUGUAGACUUGUAGUUGCCAUGCCUCUUCCAGAUUACUUUAUAGAGAAAUUAUAUUGUGCAGGUUUGAGAAUUGUUCAAGUUCGAUCAGAUUAAAGGGAUCGGCUCACUUUUGAGAAUUCAUAUGUUCCCUUUCUGAUUCAUUUGUUUAGUACUUUAGUUCUUGAGCACAGAUUAUUGUGAGCCUUCAUCCAUGAAUAAAUUAUAUAUAUAUUUGUUCAGUCAUUCACAAAGUAAUUAUCUAAAUCGAGUACUCAGUAAUAUAGCAGUUCAUGUGUGUUCAUGUUGUCUAAUGUAGAGCAGUGCAUGACUGGUUAGACGGUGAUGCAUCAGGCGGUGGCUGGCCGGACAGGUGCUAAGCAAGAGCAUGCGUGCAGCUGAUCAGUAUAAUGGAUAUGCUGGGGAUGGGUGAACAGGAUGGAAGGCAUUUUUUAUAGGCCCUUGUCAGAUGAUGGCUUUUGGCUUUAAGAUGCUCUAUGAGAAGGGUCAAGGAGAUUUUGUUCUGUUAUUUACCAUUGAUUGGCCUUUGGUUGAUAUAUAUGAAUUAAUAUACUCCAUAGGCACAACAAAAAGGUAAUAUUCAUAUAUGCAGGAUUAUUUCUUUGCUUUAAGUUUUUACUAAUUUUUACUAUGGUUAUUGGUCACUGGUCAGAUAAGGGUACAUACAUAUAUUUGCGUAGUAUAAACAUAUUAAAGAAACUCAGCUUAGUGUAUGCAAGGGGGCAUGGAACAACUCUGAUUCUGAAUAGGAAUAACUUCUUCCUUUUUCUGGGCUAGGAAUUUGAGUGUUUACUUUUUCAUUAACAAGCCUUAUAUGCUCCUAGCUAGCAGCUGCUGGUGAAUUGAUAAAAUUUUGGUGAUUUUGUCCUAACGCUUCAAAUUUUGUUUUGGGUAGAUCCAAGGACAAAUAUAUUCUCCAAACACAUGAACUUUUGUUAAAGAAAAAUAAGAUAUUUUAUUUUGAUGCACAAGUAUGUGCUAUAGACCCAACCUCUACCCAGGGGCACACGACCAAAACACAUUCCAUGAUGCUCCAGAAGUCUAGCACUACUACAACAUGCAUAAUUUCAUCUUUAUAUUGGCUUUGAUCCGGGAUUAUCCUAGCCAUUGUCACAUGCUGCUAAGAGGCGUUCCUUUUUUCCUUCUUUGUGAGAGGAGGCAACCUUCAUAUAAGCCUGGUGGCAUCUCUGACCACAUGUUUGGAGGAUGGAAUUAGGCAAUGUGAUGCACAUGACUUCAAUGAAGCGCGUUAAUCAGGGUUGUAGGUCUGGAGGAUGGCAUUAGAGAAGGUGAUGCACAUGACUUAAAUGGAGCAAGUUAAUCACGAUUGCAGGUUUGAAGGACGCCAUUACUUACACAUAAUUCCCUGUCAGAAUAAUAUUUGACAUUCAUAUGCUUGCACACAUAUGAAAUCCCAAAAUUAUCUACCUGAAUGUUCUUGUUUGCCACAUGCAUACCACAACACUAUUGACUAUUUGUGAAUUAUCUGAAAUUUGCAUUUUACUUAUGUAUGCUGAUGGUUCUCUCUGCUCAAUCUCAAUUCAAAGAGUUACAUGUCAUUUUCCUUAUAAUCUACUGUUAAGUUCCUAUUGAAUUUAUAUUCGCUGAACUCUACCCAACCAUGUUUGCUGUUGCUCCAACCAAAAUUAGGAGGCUUUAUGGUCUUUGUGUGUCAUACAACUUUAUAUAUGAAUUUGAAUUUAGUUUUACAUGGUCUGAACUUGGGCUUGCAUUGCUCAAGAACUUGGUUGACAACAUUCUGAAAUUGGCCUUGCAUUAUAUGGCAUCCUGUGUAGUGUAAUUAAUGUAUUGUUUCUAUUAAACAUAAACAGGCAUAUAUAUUUUCCCUGUGAACUAUUGGUUAUGCACUGAGUUAAUAAUUCCUGACAGCCUUUAGAAAUGUGGAACACUUUCCUUUUUUUUGUUACAAAUUUCCUAGGAGCAAAAAAAUUGCCAAUCACAUCUCAUGUUGUGUCCUCCAAAAAAAAAUGUUGUAAUUUUCUGUCGUGCUGAUGACAAAUUCUCUAUAUAUACCUCAAACAAGCUAUUCAUUUUCUGUAUUUGGAGUCUUUGUCCUUGCAAUAUGUGUGAACCUUAGAUGUCUAACAUUUGCCAGAUUAGUGUUUGAACAUUUCAUAUAUUAUUUUCUGAGCAUUUGGCAUAUUAGUUUCUGACUUGUCCUUAUGAUGUAGGAGCAUCUGAAUUUAGAAUCUGAACUUCGACAAGCAUCUAAAUAUUGUUCAAUGUUUUAAUUUGCUGUGAGCUAAUGAAUGUUAUGAAUUUCUCAUAGCUCAAGUACCGGAAGUUUAGAAAUUCUCCAGUCAAUGUAAGGUUUGUGUGGGUUUAGUGUCUGACCUUAGCCAUUGCAAUGUGUGUAAACAAUAUACUCCUAUUAUCAUUUAAGGUUGAACAUGGAAUGUAUCUUUUUUUUAGAAUUACAUGAAAUGUAUCUGAAUUUAGUGUGUGGACA
Sequence
(XR_001544003.2):
GGGAUACCACGACUCGGAUACAGAAACAAAAUCACGUGAUUUCCUCCCAACCUCCACCACGCAAUUUUCUCCGCCUUCAUCGCCGCCUCCUUCCCCUUCCGCGCGGUGCCUCCCUCCACCACUGCCGCAUCGGCUCCUGCCUCCUAUCGCCGCUUCCGCUGCUCCUGUCGUCACCGAUGCCGCUCCCGUCUUCGCCGACGACGCCGGUGACUCCCUCCACCGCCGCCUGGUCCCCGCCUCCGUGCCGCUCGCCACCACAAUUGGGCCUGCUGGUCCAGGGUUCCGUUGGCGCCACAGCCCCGUCGCCGACCAGUGGUUCAGCCUUCCGCCAGUGCCGCUGCUCCAUCGUUCUCCGGUGGUCUAGCCUUCCGUCGCGCCUCCGGUCUUGCCGCCAUUACGAGGGGCAUAGUCUGCCAUAGGUACUUCCAGCCGUGCGCCAAAAUUUCUUCUGCUGGUGAGAUCGAGUGAGACCCCAUUGACUCAAAUUGACUCUUCUGAAUCCCCAUUAGUCUUCUGUGUGGAUUCUUAUUCAGCUGAAGGGCUAUAUCCUAUCAAGGUGACUGGUGUUGCUCCAUACAGACUAACAUUGUAGACUUGUAGUUGCCAUGCCUCUUCCAGAUUACUUUAUAGAGAAAUUAUAUUGUGCAGGUUUGAGAAUUGUUCAAGUUCGAUCAGAUUAAAGGGAUCGGCUCACUUUUGAGAAUUCAUAUGUUCCCUUUCUGAUUCAUUUGUUUAGUACUUUAGUUCUUGAGCACAGAUUAUUGUGAGCCUUCAUCCAUGAAUAAAUUAUAUAUAUAUUUGUUCAGUCAUUCACAAAGUAAUUAUCUAAAUCGAGUACUCAGUAAUAUAGCAGUUCAUGUGUGUUCAUGUUGUCUAAUGUAGAGCAGUGCAUGACUGGUUAGACGGUGAUGCAUCAGGCGGUGGCUGGCCGGACAGGUGCUAAGCAAGAGCAUGCGUGCAGCUGAUCAGUAUAAUGGAUAUGCUGGGGAUGGGUGAACAGGAUGGAAGGCAUUUUUUAUAGGCCCUUGUCAGAUGAUGGCUUUUGGCUUUAAGAUGCUCUAUGAGAAGGGUCAAGGAGAUUUUGUUCUGUUAUUUACCAUUGAUUGGCCUUUGGUUGAUAUAUAUGAAUUAAUAUACUCCAUAGGCACAACAAAAAGGUAAUAUUCAUAUAUGCAGGAUUAUUUCUUUGCUUUAAGUUUUUACUAAUUUUUACUAUGGUUAUUGGUCACUGGUCAGAUAAGGGUACAUACAUAUAUUUGCGUAGUAUAAACAUAUUAAAGAAACUCAGCUUAGUGUAUGCAAGGGGGCAUGGAACAACUCUGAUUCUGAAUAGGAAUAACUUCUUCCUUUUUCUGGGCUAGGAAUUUGAGUGUUUACUUUUUCAUUAACAAGCCUUAUAUGCUCCUAGCUAGCAGCUGCUGGUGAAUUGAUAAAAUUUUGGUGAUUUUGUCCUAACGCUUCAAAUUUUGUUUUGGGUAGAUCCAAGGACAAAUAUAUUCUCCAAACACAUGAACUUUUGUUAAAGAAAAAUAAGAUAUUUUAUUUUGAUGCACAAGUAUGUGCUAUAGACCCAACCUCUACCCAGGGGCACACGACCAAAACACAUUCCAUGAUGCUCCAGAAGUCUAGCACUACUACAACAUGCAUAAUUUCAUCUUUAUAUUGGCUUUGAUCCGGGAUUAUCCUAGCCAUUGUCACAUGCUGCUAAGAGGCGUUCCUUUUUUCCUUCUUUGUGAGAGGAGGCAACCUUCAUAUAAGCCUGGUGGCAUCUCUGACCACAUGUUUGGAGGAUGGAAUUAGGCAAUGUGAUGCACAUGACUUCAAUGAAGCGCGUUAAUCAGGGUUGUAGGUCUGGAGGAUGGCAUUAGAGAAGGUGAUGCACAUGACUUAAAUGGAGCAAGUUAAUCACGAUUGCAGGAGCAUCUGAAUUUAGAAUCUGAACUUCGACAAGCAUCUAAAUAUUGUUCAAUGUUUUAAUUUGCUGUGAGCUAAUGAAUGUUAUGAAUUUCUCAUAGCUCAAGUACCGGAAGUUUAGAAAUUCUCCAGUCAAUGUAAGGUUUGUGUGGGUUUAGUGUCUGACCUUAGCCAUUGCAAUGUGUGUAAACAAUAUACUCCUAUUAUCAUUUAAGGUUGAACAUGGAAUGUAUCUUUUUUUUAGAAUUACAUGAAAUGUAUCUGAAUUUAGUGUGUGGACAUACCGUUGCCAUUUUUUUGAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.41%
ME_num:
MEP:
23.37%
HE_num:
HEP:
76.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.60
Avg Expression:
17.22
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.82881594817314 | 1.09959417674196e-12 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.89201620104155 | 1.18597830542508e-14 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.74098554742458 | 2.39982616590966e-35 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.61440842740674 | 1.0938861147305e-22 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.71038907169685 | 1.35162661876148e-31 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.17156094611137 | 1.97635357753243e-17 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.83380900843773 | 3.82561964616015e-15 |
| 8 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.03232428832069 | 7.59221542457049e-05 |
| 9 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | -1.00945901771867 | 0.000811887209400915 |
| 10 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | -1.02804085012297 | 0.000686851891811334 |
| 11 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -1.15381008646719 | 3.74448514148934e-05 |
| 12 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -1.16757844836764 | 0.000106580411705366 |
| 13 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.15341086923672 | 4.5931805962823e-06 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.18151821111707 | 2.95377948347095e-11 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.12757511047091 | 4.8617731647121e-08 |
| 16 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -1.17278181274232 | 4.49889069726452e-09 |
| 17 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -1.20428722512022 | 2.50850298111324e-09 |
| 18 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.85065554876161 | 6.8387126546108e-14 |
| 19 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.07775120180971 | 7.18170271055756e-20 |
| 20 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.11480621240732 | 1.25125813626402e-05 |
| 21 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.27729095077715 | 5.40401602533624e-14 |
| 22 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -3.0843252383651 | 2.70253068513065e-25 |
| 23 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.20477564317498 | 3.14329973178837e-09 |
| 24 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -3.0844256515626 | 3.17971671405728e-25 |
| 25 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -3.08451482396838 | 2.85495210853088e-25 |
| 26 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.41746879572541 | 2.64970029803785e-20 |
| 27 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.77555267739976 | 5.08168148701855e-11 |
| 28 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.58347006189822 | 2.71978798918587e-14 |
| 29 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.03456448592816 | 8.59919597383356e-19 |
| 30 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.6065843133055 | 7.88451954117996e-12 |