RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC9266549

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr11

Start:

14153485

End:

14162141

Strand:

+

Ref_name:

LOC9266549

Sequence
(XR_001541167.2):

CCAUACAAUCCCCAGUCCCCACUCCACCAUCCCUCCUCCCUGCCUAUCUUCACUCUCCCCCUGCGACCGCCGCUAGAUCUGGAUGCGCCGACUUCGGCUCAGGCGACGGCCGACGGCGUUAGGCGCGUUGGCGGCUUGCUGGCUGGCGGGCUGAGGGUGUGAGGUAGGCGGCGUCGCGAAUCGCGGGCGCGCACAGCGGCUGCGCCGUGCCCAUGAGCGAUGGACGGAAAGGCGCGGAGGAGCCUGCAACCAGGCGGGUGGCGGCCAGGCGAGCGGCCGACGCCCGUGAAGGCUGCGUCUGGGGCUCCACCAGGAAUCGCCACCAAUAGCCGGCUCUCACGCUUCAGAUCCGAACGCCAGCUGACCAGCGCCACCCUCUGGAACUGGAGAAUCCCAGUCACUGCUCGUGCGCACUGCUGGCCCGGCCUCUCGACGUCCUCCCUUCUGGCAGCCGCUGCUUGAUUGCUUGUCUUUUGCAGUGAACUAUGAUUUUGGUGUUGCGGCCUACUCAGUGCUCACCCAUCACACUCAUACCUGAGAAACUGGUGCUAUGAAAAUCUGCAUAUUGGACUGUUUAUGCAAUCAUUUCAAAAGAUCAUUUAUGUCCUGAUGCCGCAGUCAUCUCUACUUCACUAGUUGAGUUAAGCAAUCGCUAAUUGCUUGGAAAACUAGGAAGCACAAUAUAGCUGAAGGUCCAGACAGGGGUUUGACAUCAUGGCUUAGAGCAAUAGUACCAUGCCAUUUUAGAGUGAAGUAGUAUUCCCAGGAUGCAAAAGAGAUACAUUGAAAUUUGCCUAGUAAGUCCCUUUUUUUGGACUGCUUGCGAUGCCGUUCAUCUAAACUUAUGUCUGGUUGAACGGCUUUUGGUUUCUAAGCCUGUACUUGUAGGAAGUAGUGUUCAAUUCGAUCUCAGUUGUAGCUGUUUAUGAUAUUUGUAUUGCUAUUGUUUGAUACCAUAUUGUUGUCAAAUUGAUUAAUCGAAUGAAUAUGUAUGUCGAUGCAUUUGAAUCCA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

8

LEP:

1.63%

ME_num:

226

MEP:

45.93%

HE_num:

257

HEP:

52.24%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot_apical_meristem

Tau :

0.58

Avg Expression:

18.13

Tip: OSA-LNC9266549 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS2561.48593989428910.00590332170184908
2Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS2791.141274212516750.0353910620676038
39311 // leaf // control--/--9311 // leaf // salt1.132336962080630.000855427012420853
4Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_121.219897077020560.00536456838871349