RiceNCexp:Browse

OSA-LNC9266496

Function Link

Tissue-specific Expression analysis

Differential Expression analysis

Co-Expression Curve

Network analysis

Basic Info

Chr:

Chr7

Start:

29021256

End:

29024330

Strand:

Ref_name:

LOC9266496

Sequence
(XR_001547648.2):

AAAAAAAAGGUAUGGAACAUCAUCAUGUAGAAACUAAAAUUUAAGUUGACUCAAAUUAAGUAGAAAACAUGCUAGAAAGAAGUAUCCCUCCCUCACUGCUGACAAAAGGAAUGAGGGCUUCAAAAGAAUUGAGAGUACAGGUAGCGGUCCUAGCGGAAGAAAGGAAGCAUAUGGAGCAAUGAAUUGGUCUGCCUCUACUACUAUUAGAGGCAAACAACAAUGCUGGGAUGAUUUUUAUAAGCAGGACAUGAACGCUAGAAAGCUAAAUUGACACCCUGGUGCCUCCCGUUUAUAGAUGUCACCAACAAGUAAGAGUGUUCCUCUCGUGUUUAUAUUGGAAUAUUGUUAUUGCUUCUAUCUGUAAAACCUGAAAAAUCUGAAACCAUUCCUAUACUGAAUAAUAGAAGAUAUAAAAUGAAUAUGUGUUGCCAUUGCAUCCUUAUAUUUAUUUCUUCAAUCCACAAUUAACUAUCUAAACCACUUUUUUUUAUUUUAAUUCACAUAAAUUAUUUUCGUUGCUGGUUUUAGUAUGAAUAUUUUGAUAUAUCUCCGUGCAAAAAAGGAUUUUGAUAUAGCUAUAUGCAUGUGCAUUGCCAUUCGAUUCCUUUUCCAAUAUGUAACAGUAGUCAUUGUAAAUAUACUUUCAUAUUGUUUCUCUCUGUUGGGGCAAGAACUCUGAAAAAUGAUAUUUGGGGUGGUUGAUAGGCUCACCAGGUAAAAAGGUACUUCAUACUAUAUAUGUCUAGAUUCAUUGACAUCUAUAUGAAUGCGGGUAAUGCUAAAAAGUCUUAUAAUAUGAAACGGAGGUAGUAGAAACUAUGUAAAGAAAACUUCCUUCAAUUUAGUUUGUAUGGGCAUUAUUAAGUUACCUAAAACAAAUACUAAGAAUUUUGGGUCAAAAGGUAUGUUUUCUCCACAUAAUUUUGAUGUAAGAGUGAUAUGGUUCAACCCAUAACUCUUUAAUUUUGAUAUGGGUGUUCAGUUGCUACUUUUCUUCUUUUUGCGGGAAAUUUAUUUGCAAAGCACUCAAUUUACUGCUCUGCAAUUGCUUCACAGGUAACAUUCAUGCUUUCAAAUCUGUACUGUUCAUUCAUCUAUGAACAUAUAAAUGUGAAUUUUAUACUGCAAAAAUAGCUCACCAUUCAGUUUCAAUAGUUUAUGUUAAUGUUUCCGUAUAACAUUGGAACCAUGCCCCAUGCAUCCUUUUAUUAGCAAUAUUAACUGCUCAGAUCGGGCUGGGGGUGUUAUCUUCAGAGGGAGGAAAGUGUGAGGAAAAAGUUUUCAUGGCAUCAUUAGUUGUUCCCCUAAGAAAAACAUAUGUAUUCACCUGGAUAUUUACAAUUUUUUGUUUAUCAGAAAGUAAAUGAUGAGUAUAACCCUAAUCCUCUCAUUUUAGUCCUCAUUUUAGAUCAGUAUUCCUUAUUGAAUGUAAAACUGAAGUUACACUGAUGCAUGAUCACAGAAUUAUUCUAUGGGAUUGGUUGUUAUUUGUACUACUGAGUACUGACCAUUCUCUCAUGAUAUAUGAACAGAGCAUAUGCUCCUAGCAAGAAAUGUGGCAUGGGUGAGUUUAUAGUCUUGCUUUCACCAUGUAUGAAAUGUGGCAUGUCAAACUCCAAAUCCUCUACCCAUCCAGAUCUGCACCAGCCACCAACCACCACCCGAGUCAGUCCGCCGGCUCCGGGAGCCCGGGAGCCACGCGCGCCGCCGUUCGCCAGUCCACCGGGAGCCCGGGAGCCGCGCGCGCCGCCUUUUGCCAGCCACCACCGACGCCGUUCACCAGUCUGCCAGCCACCACGCGCGCCGCCACUCACUGCCUUCUCUCGCCGGGAUACUAAAGCUGUCAUCGCCGGCCGUCGCCAUGGACUGAAGUCGCCGUCGCCGGCCGCCUUUCAUCAAUGCGCCGCCGGGCCGGCGCGGCGCCUGCAGCCAUCUUCACCGGGAGCCGCUAUCUGCCGACCAUGGCUUCGGCCUCCCCCCCCCCCCCAUAAGCUACGACAGCGACGAUGCAAGGAGCAUUUUUGGAGCAUUGUGAUCUAUAAUUUGCUGAUUUGUUGAAUGGAGCAUUUUGGAUAUAUAUGAUAUAAUGUGACUGUGAAUAUGUUGUUUAACCGAGGAUAGGUUCACCA

Sequence
(XR_001547647.2):

AAAAAAAAGGUAUGGAACAUCAUCAUGUAGAAACUAAAAUUUAAGUUGACUCAAAUUAAGUAGAAAACAUGCUAGAAAGAAGUAUCCCUCCCUCACUGCUGACAAAAGGAAUGAGGGCUUCAAAAGAAUUGAGAGUACAGGUAGCGGUCCUAGCGGAAGAAAGGAAGCAUAUGGAGCAAUGAAUUGGUCUGCCUCUACUACUAUUAGAGGCAAACAACAAUGCUGGGAUGAUUUUUAUAAGCAGGACAUGAACGCUAGAAAGCUAAAUUGACACCCUGGUGCCUCCCGUUUAUAGAUGUCACCAACAAGUAAGAGUGUUCCUCUCGUGUUUAUAUUGGAAUAUUGUUAUUGCUUCUAUCUGUAAAACCUGAAAAAUCUGAAACCAUUCCUAUACUGAAUAAUAGAAGAUAUAAAAUGAAUAUGUGUUGCCAUUGCAUCCUUAUAUUUAUUUCUUCAAUCCACAAUUAACUAUCUAAACCACUUUUUUUUAUUUUAAUUCACAUAAAUUAUUUUCGUUGCUGGUUUUAGUAUGAAUAUUUUGAUAUAUCUCCGUGCAAAAAAGGAUUUUGAUAUAGCUAUAUGCAUGUGCAUUGCCAUUCGAUUCCUUUUCCAAUAUGUAACAGUAGUCAUUGUAAAUAUACUUUCAUAUUGUUUCUCUCUGUUGGGGCAAGAACUCUGAAAAAUGAUAUUUGGGGUGGUUGAUAGGCUCACCAGGUAAAAAGGUACUUCAUACUAUAUAUGUCUAGAUUCAUUGACAUCUAUAUGAAUGCGGGUAAUGCUAAAAAGUCUUAUAAUAUGAAACGGAGGUAGUAGAAACUAUGUAAAGAAAACUUCCUUCAAUUUAGUUUGUAUGGGCAUUAUUAAGUUACCUAAAACAAAUACUAAGAAUUUUGGGUCAAAAGGUAUGUUUUCUCCACAUAAUUUUGAUGUAAGAGUGAUAUGGUUCAACCCAUAACUCUUUAAUUUUGAUAUGGGUGUUCAGUUGCUACUUUUCUUCUUUUUGCGGGAAAUUUAUUUGCAAAGCACUCAAUUUACUGCUCUGCAAUUGCUUCACAGGUAACAUUCAUGCUUUCAAAUCUGUACUGUUCAUUCAUCUAUGAACAUAUAAAUGUGAAUUUUAUACUGCAAAAAUAGCUCACCAUUCAGUUUCAAUAGUUUAUGUUAAUGUUUCCGUAUAACAUUGGAACCAUGCCCCAUGCAUCCUUUUAUUAGCAAUAUUAACUGCUCAGAUCGGGCUGGGGGUGUUAUCUUCAGAGGGAGGAAAGUGUGAGGAAAAAGUUUUCAUGGCAUCAUUAGUUGUUCCCCUAAGAAAAACAUAUGUAUUCACCUGGAUAUUUACAAUUUUUUGUUUAUCAGAAAGUAAAUGAUGAGUAUAACCCUAAUCCUCUCAUUUUAGUCCUCAUUUUAGAUCAGUAUUCCUUAUUGAAUGUAAAACUGAAGUUACACUGAUGCAUGAUCACAGAAUUAUUCUAUGGGAUUGGUUGUUAUUUGUACUACUGAGUACUGACCAUUCUCUCAUGAUAUAUGAACAGAGCAUAUGCUCCUAGCAAGAAAUGUGGCAUGGGUGAGUUUAUAGUCUUGCUUUCACCAUGUAUGAAAUGUGGCAUGUGAGUUUAUACUCUUUCUUUCACCAUGUUGACUUUUUGCACAUUUAUAGAAUCUUUUGGUAUAAUGCUUUGUGUCGAUUCACAUGUUUUAUUAAUUAUUAACGACCAGCUGCAUAGGAAAACUGAGGAUGUACAUGGUUGAAAAGCCUAUAACAUUAUUACUAUGUUCAUUUAUCUACAAUCGUUUGGAUUUAAGAGUUUAAAGGAUAAUUUACUAAGGUGGUUAUCUCUGGUAAUUAGUUUCUUGUCUUCAUCUACUCCUUUUGUACCAGAAAAAAUAAUUUUUGGAUGAUGAUAAUAUACUAAGGCCAACUGCAGAUGUUGUGACUAAUAUUGCACAUCUUCAGUGCAUGCUUAUCUAGGGUGGACACUAUGUUUAUUCCCGACAGUUCUUAAUCACUUAGAAAUAGGGUUAUGAAAUUCAGCAACAUAUGUGAUUUGAUCUGAAAGAAUCAUCAAAGAGUUCAUCUUUGUGUAAGCUUAUAUUAUAAAAGAUUUUAUGCCAACAUUUUAUCUUUCCAACACGUGUCUUGCACGUGCACGAUUACUAGUAUAUAAUCUAACCCUAAGUCAACAGGUCAAACUCCAAAUCCUCUACCCAUCCAGAUCUGCACCAGCCACCAACCACCACCCGAGUCAGUCCGCCGGCUCCGGGAGCCCGGGAGCCACGCGCGCCGCCGUUCGCCAGUCCACCGGGAGCCCGGGAGCCGCGCGCGCCGCCUUUUGCCAGCCACCACCGACGCCGUUCACCAGUCUGCCAGCCACCACGCGCGCCGCCACUCACUGCCUUCUCUCGCCGGGAUACUAAAGCUGUCAUCGCCGGCCGUCGCCAUGGACUGAAGUCGCCGUCGCCGGCCGCCUUUCAUCAAUGCGCCGCCGGGCCGGCGCGGCGCCUGCAGCCAUCUUCACCGGGAGCCGCUAUCUGCCGACCAUGGCUUCGGCCUCCCCCCCCCCCCCAUAAGCUACGACAGCGACGAUGCAAGGAGCAUUUUUGGAGCAUUGUGAUCUAUAAUUUGCUGAUUUGUUGAAUGGAGCAUUUUGGAUAUAUAUGAUAUAAUGUGACUGUGAAUAUGUUGUUUAACCGAGGAUAGGUUCACCA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

NE_num:

NEP:

0.2%

LE_num:

LEP:

19.31%

ME_num:

286

MEP:

58.13%

HE_num:

110

HEP:

22.36%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10

Tissue :

caryopsis

Tau :

0.84

Avg Expression:

17.73

Tip: OSA-LNC9266496 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01

Num.	Condition	log2(FoldChange)	Padj
1	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN	-1.17486887148952	3.28826030266685e-10
2	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA	-2.99818664697756	1.17642014377715e-22
3	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN	-1.46650935503571	9.93864143567028e-13
4	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA	-1.14180597224711	3.11207791651872e-08
5	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN	-1.35312982144668	2.1791449809082e-13
6	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA	-1.60662521549186	2.38884791532065e-20
7	Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated	-1.18109871318389	0.000108706082618987
8	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA	-2.01462437106859	2.27438705195904e-23
9	Baldo // root // control--/--Baldo // root // 100 mM NaCl	1.22322324007309	0.0108267664294131
10	Baldo // leaf // control--/--Baldo // leaf // 100 mM NaCl	1.28982329028344	0.0044971761886175
11	Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl	1.53875434924169	0.000334792438280489
12	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA	-1.59742470639953	5.70892866792416e-18
13	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN	-1.58886772415469	4.24178932861492e-22
14	Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated	-1.20732454130764	0.0140259501933223
15	Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae	2.63715496193486	4.28772491324148e-162
16	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA	-1.41754141431875	1.27239242722186e-13
17	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA	-2.30382007889104	4.0225787570465e-38