Chr:
Chr3
Start:
4347018
End:
4348135
Strand:
+
Ref_name:
LOC9266398
Sequence
(XR_001544393.2):
AAUUUGGAAGCAUCAAACCAUGAGUAACACUAGUAUAAGACCAGCCGUUUGUCCUCAUUUGCAGAAAGGGUUAGAAACCCUUAGAUUUCAUGCCAUCAAGCGUAACAGUGUAACCCCACCAUGUCAUUUCUUUGCUACUUAUAGCAUCCCAAGUUGAUGAUCCAUUUCAUGUUUUCUCUCCUUUUUCAGAUGCAUACUAUGAUGUCCAAUGUGGGUGUCUGAACUGAAAUCUGAACUCUGAACUCUGAAGGCUGUUGUUUCCAUCAGGGUGCAUUGGUUCAGCAGAGAUCGGUGAUCUAUGUUUUCAUAUUUGGUCACGUUCUACCGGUCUUUUUCGAUGGAAAUGAAGGUAAUUGGAGGAGUUCUAUCUGUUUGAUGGAAUUCAGAACCAAAAUCCGAAUUCCACAAAAUGGCUAGAGGAAAAUUUUUAGGGCUAUUUGCAAUUCCACAACCAUAAGCAUGGCCAACUGGUAGUUCUCCAAGUAAAAGAAGUUAGGAGCUGGUUAUGAUGGUACUAAUUAUUCAGUUUCUUCUAUUGAUCCUGAAAGUUCUAUGCCAGGAUAAGAAAAGCUUGUGCAAACCCUCCAAGCCAUGAAAACAAUUAUCAUCAAGAGAAUUGAAGAUUCUAUUUUUUUUUUCUUAGGAUCUGCAGGGAAAAUUAUUCAGAUAGUGGAACAGGUUCAAGUAGCCAUUUGAAACUCAACACAACUUUAUAUCAAGAACAAAUGAACAAUGAAUGGUAGAUCCAAUCUUCAAUGGAGAAUCAUGGACCACCGAAUUGGGCUAUCUUCCCGAGCUAUCUACGACUACAUGCAUAGUAUAAUAGAUGCAAUCAUGCAAGUGUGCAACUAGUAGUUUUUUUUUUCUGAAGGAGAUGAGAUUAGGUAUAGCAUGUAAUGGUCCUGGUGUAUAAUGCCAUGGCACACUCAACUUGCAUUUAAACAAUGCUAGUCCCUGCAGACCUUGCCAAGUUC
Sequence
(XR_001544394.2):
UUGGAAGCAUCAAACCAUGAGUAACACUAGUAUAAGACCAGCCGUUUGUCCUCAUUUGCAGAAAGGGUUAGAAACCCUUAGAUUUCAUGCCAUCAAGCGUAACAGUAUGCAUACUAUGAUGUCCAAUGUGGGUGUCUGAACUGAAAUCUGAACUCUGAACUCUGAAGGCUGUUGUUUCCAUCAGGGUGCAUUGGUUCAGCAGAGAUCGGUGAUCUAUGUUUUCAUAUUUGGUCACGUUCUACCGGUCUUUUUCGAUGGAAAUGAAGGUAAUUGGAGGAGUUCUAUCUGUUUGAUGGAAUUCAGAACCAAAAUCCGAAUUCCACAAAAUGGCUAGAGGAAAAUUUUUAGGGCUAUUUGCAAUUCCACAACCAUAAGCAUGGCCAACUGGUAGUUCUCCAAGUAAAAGAAGUUAGGAGCUGGUUAUGAUGGUACUAAUUAUUCAGUUUCUUCUAUUGAUCCUGAAAGUUCUAUGCCAGGAUAAGAAAAGCUUGUGCAAACCCUCCAAGCCAUGAAAACAAUUAUCAUCAAGAGAAUUGAAGAUUCUAUUUUUUUUUUCUUAGGAUCUGCAGGGAAAAUUAUUCAGAUAGUGGAACAGGUUCAAGUAGCCAUUUGAAACUCAACACAACUUUAUAUCAAGAACAAAUGAACAAUGAAUGGUAGAUCCAAUCUUCAAUGGAGAAUCAUGGACCACCGAAUUGGGCUAUCUUCCCGAGCUAUCUACGACUACAUGCAUAGUAUAAUAGAUGCAAUCAUGCAAGUGUGCAACUAGUAGUUUUUUUUUUCUGAAGGAGAUGAGAUUAGGUAUAGCAUGUAAUGGUCCUGGUGUAUAAUGCCAUGGCACACUCAACUUGCAUUUAAACAAUGCUAGUCCCUGCAGACCUUGCCAAGUUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
59.35%
ME_num:
MEP:
25.61%
HE_num:
HEP:
14.84%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.95
Avg Expression:
303.37
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 8.23531832478345 | 3.78416541081975e-192 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 7.63495113001178 | 1.05927855412804e-160 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 8.42520631562694 | 7.74959881951627e-206 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 9.70443235606799 | 1.22064970303743e-186 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 8.89765569096108 | 5.60965655891634e-218 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 6.80741436389869 | 4.67532996472406e-123 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 2.85083291794414 | 1.62589245098112e-12 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 8.31136672828549 | 2.81772368562175e-201 |
| 9 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 2.96487750470823 | 0.0234037567353217 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 5.32587290456698 | 0.00300440504757 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 4.98894548596208 | 0.00536915399798666 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 4.58219529406754 | 1.82034561416382e-44 |
| 13 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | -7.24812375978249 | 0.00086885016680012 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 6.26550467610689 | 2.25882305183887e-109 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 8.62729307259181 | 1.93337214947013e-211 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 5.44888223835659 | 0.00670248558815944 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 4.29903296433639 | 0.0176873380852384 |
| 18 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 4.93000116763915 | 0.0131878257446853 |
| 19 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 4.48653544545556 | 0.0204158480172453 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 9.15276656747201 | 6.84448394608993e-235 |
| 21 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 7.10849063474074 | 6.86811670114617e-142 |