Chr:
Chr5
Start:
12324836
End:
12326194
Strand:
+
Ref_name:
LOC9266397
Sequence
(XR_001545914.2):
AACCCCUUUCAUCUUCACUGCUUGUUCUAUCUUUUCUUCAUCAAGCUGAGCUCUCAUCUCACUCCUCCUCCCCAAAUCACAUCCAAUAGCCCAAGAUCAAUUCCUGCAUGUUUGACCACAACAAUUCCCAUCAUCCAAGCUUUCCAUCCAUCCCAACAUCUUGCACAUGCAUGGAGAGUUGAGAGAGAUCGAGAAGGAAUAAAAGAGUGCUGGUUUCAGCCUACAGGGCUGCAGCAGCAGCAUUUUGUUUUCCUCCAUUUGGUUGUCCACUCCAUUGCUGCAGCUAGAAGGUGGCUGCAACUCACCCCGAGUUCAUCUCUUUUGAUUUCGGUUGAAGCAGCCCUAGGCAACGUCUCUUGCCGUCAGCCCAAGACCUUGCUCCAUCUCUUGCCAUCAGCCCAAGGCCUUAGCCUCGCACAACCCUACGUCCAGGUUGCUGCCAUGUGAGUGAAGUCCGGUGGAAGUUGGAGAAAAGGGGAGUGAAAAUAGAAAUCGAUUUCUGAGAUAGCUAUUGAGCUGAAAGAGAUUUGGAGAUUCCGGAGAGUAAUGAGCCAUAUCCAGAGGAGGAUAGUGACUUCCCUCAGCAGCAAGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
79.07%
ME_num:
MEP:
13.62%
HE_num:
HEP:
7.11%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.95
Avg Expression:
18.41
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | -2.04388124562177 | 0.00318663128493619 |