Chr:
Chr11
Start:
14127325
End:
14131296
Strand:
+
Ref_name:
LOC9266386
Sequence
(XR_001541626.2):
GAUCUUUGGAUCGGAUCGAUCAUCUCCUGUCGCUUGCCCCUUCCCUGUCGCGAUGGAGAGCGAUGCCGCGCCACAGCCGAGCACUGCCAACGCCGGGCGCCACCACCCUGCUGGCUGCCGCCGAGCGCUGCCACCCCACCUGCCGCCGAGCAGCCCACCAUCCAUCUGCAAUCGUGCAUCUGAUCUUCCAAUUGAUGCUUCUAUAUGAAAUGACUGACGGUGAGGACAUCCAGCGUCUUGCGUCUUGUAUGUGAUAAUGGCACUGGAGUGGUCAAGGUCAGAUUUUCUUUUUUUACUCUUAAGCCUUAACUAGUGGAGUAACUGCUAUGUAUGCCCCAUCUCCUGCAAAAAAAAUUUUCUGAAUAUGCCGCCCUUUUGCAUAUUUGAUCAUGUAGGCUAGUUUCAUUGGGGAUGAUUUGUUGUUGGGUAUUUUUAUCAGAGCUAUGUAGAUUGAGUAUGACAAUUGGGUAUUUUUAUCAGAGCUAUGUAGAUUACUUAUUUGUGUCUUUUUCUCCAAUCUGCUUCACCAAGAAUGGAGUUAGGGAGGUAGAGCCAGAGGCAAGGAGUAGGAGGGAAAGGGGAUGGUGCCUCUUCUUGGCUGCUUCAGUUCUUUUUUCCUCUCGGCCACAAGCAAAUCAGCCAAGACUCUGUUUUAGAUGGCGCCGAAGGCCACGGUGAGGCAGGGUUCGACAGAGGGAUAGCCGUGACACUGUAGAUGAGGGCACCAGAGGCUGCCAUUACGCCGUCGAGGAGGUGGGGGAUGCUUCCAUGGUUUUUCUCGCACCGGUGGGCGAGGCAGCCGUGAUAUCUCUCCUGGAUCUCAGUAAGCAAGCAAGCACGUUCCCAGGGCUAUCGAGGAGGCAGUCACAAUGACCCUGAUGGUCUUCAGCGAGGCAUAUAUGAAUUCCUUUGUCGCAGGUGGCGAUGCAGUCCCGACGCUAAUCAUGUUGAUGGGCGAGGUGGUCAAGGCCUCUCUCCUUUACGAGGUGGGCUAAUCGUGUCAGUUUUUUUUCUACAUCUUUGUGGUAGAAACUAAGAAAUCAUAUUAUUUAGGUCAAAGAAAUAUAAUCUUGUAAUCUGAACAUCUAAAGAUAUGUAAUCUGCAUAUGAAGAUUACAACACUGAAGCAAAUUACUACUGACGAGUCAUAUGUUUUGUCAGUUGCUAACAUUUGUAUUUUAUCAGCAAUAAGACUGCAUCACCUCAUAAUUUUAGUGAAUAUUACUUAUUUUUGUUAGUUUUGUCUGAAAAAGUUAUGUCAUGUCAGCUUUGUGAAUACUACUUAUUUUUGUCAUGUUACUUUUGUCUGAAAAAGUAUUGUUUCUUUUUGUAUUUUUGAUUUUGUGUUUGUUUUUAUCCAAAAAAUUUACUUUGUCAGAAAUGAGCAUAGUUUCAGAAAUGGAGUGUUUUUUUUUUUUUGUCUUUGUUAGAUUUUUAUAAUUUUGGUAAUAUUAAUCAGUUUAUCGCUUAUUUAUGUCAUAGCCUAACCACUUGAAAUCGUUCUUAAUACUGUUGUUUGCUUGCCAUAGAAAUCUCUCAAUUCUAGCGUCUAUGUUUUUGUCAGAAACAGUCUUAUAUCAAAUAAUACUUGCAAGAUACAUAUUUAUCUAAUGCUAUGACAGAAAAAGCUUUGGUAUCUAAUUCAUAUAUCAAAUAUAUCUAUUCACUUAGUUUUCAAACUAGUUUUGAACCUUGAAAAUACUAGCGUUGUAUAGUUUUGCAUCAAUUUAAAACAAGCUAUGGUAUCUCAGUUUUGAGUUUUAUAACAAUAUAUGCUAUGAGUUUUGUUUCUUCAUUUAAACACAUGUAAAGAACAUGGGAUUAUUUAGUUCAAAUGCCAUGAGUGGUAGCAGUCCUUGACAUUUGGCAGUCAGCCCCUGGCCUCCUGAAAUUUUAAUGUAGUAGGAUUUUUUGUUAGACAUCUGCUGCAUUGACUAUCAGAUUUCUGGAGAAUUGAUUAUGUUCUGGAAAGGAAAAAGUACACCGAAGGUCCCUCAACUUGUCAUCGGGAUACAAAAACGUCCUCGAACCGUAAAACCAGAUAUGCGGGGUCCCUUAACUAUACAAAACCGCUCACCCGAGGCCGACCGACGGGUAGGGAGCAGAUGACCGGGCGGCAAGCGGGGCUAAGCGGCGCCGGCGGAGGCGGCGUGCGAGCGCGCGGCGGCCGGCGAAGCGGAGUGGAGCGGAGGCACAGAGCAGCGGUGGCAGCAAGCGGGCGAGCGCGCGUGAUGUGACCAUGCCUACUACAGAUAGAACCAUUGCUCACAUCAUACAUCAAAUGGAAGUCAUCAAGAUCCCACACAACUUCGGAAAUCCAAUUCGGCCACCUGCAAUAGAGCUGGCUUCAAACGGGCGCCAAAUUUGCAUAUGAGCUCCAUUUCAAUCAUAUGAGUACUCGUUGGAAAGAUCUUGUUGUCUACUUUCAGAUAUGUCCAGCCUCACCUUAAGAUCCGAACCGAGCUGCUCAGAAUGACCAAAAUAGUUUUCGCAUCUGAAACUCGGGCUUGGGCGUUUGUAUCUUUACAGCCCAUUAGGGGUCCACAAAACCUAGGGUUUGCUCCCACCUCCUCUCCUGGUCAUUCCUCCACCUAUAUAAACUCCUAGCAACCCCCAUUUUGCAGUUUGGGUUUUUGUUUAGAUGUAAGUUUAGCUGCAG
Sequence
(XR_001541627.2):
ACUCUAAAUUCUCGUGUCGACUCCACUCGAAGCCUCUUCGUCUCCCUGCGACUUAGCUCCGCCCGCCGCCUGCGCCGAUCUCCAUUCCGUGAGCAGAGCAGAGUCAACUUCCGCCGAAUCUGCUCACCAUUCAAUCCAAUCCUCUUUCUCAUCUCUCUCUCCGCAUCCUCGGUGCUUCUAUAUGAAAUGACUGACGGUGAGGACAUCCAGCGUCUUGCGUCUUGUAUGUGAUAAUGGCACUGGAGUGGUCAAGGUCAGAUUUUCUUUUUUUACUCUUAAGCCUUAACUAGUGGAGUAACUGCUAUGUAUGCCCCAUCUCCUGCAAAAAAAAUUUUCUGAAUAUGCCGCCCUUUUGCAUAUUUGAUCAUGUAGGCUAGUUUCAUUGGGGAUGAUUUGUUGUUGGGUAUUUUUAUCAGAGCUAUGUAGAUUGAGUAUGACAAUUGGGUAUUUUUAUCAGAGCUAUGUAGAUUACUUAUUUGUGUCUUUUUCUCCAAUCUGCUUCACCAAGAAUGGAGUUAGGGAGGUAGAGCCAGAGGCAAGGAGUAGGAGGGAAAGGGGAUGGUGCCUCUUCUUGGCUGCUUCAGUUCUUUUUUCCUCUCGGCCACAAGCAAAUCAGCCAAGACUCUGUUUUAGAUGGCGCCGAAGGCCACGGUGAGGCAGGGUUCGACAGAGGGAUAGCCGUGACACUGUAGAUGAGGGCACCAGAGGCUGCCAUUACGCCGUCGAGGAGGUGGGGGAUGCUUCCAUGGUUUUUCUCGCACCGGUGGGCGAGGCAGCCGUGAUAUCUCUCCUGGAUCUCAGUAAGCAAGCAAGCACGUUCCCAGGGCUAUCGAGGAGGCAGUCACAAUGACCCUGAUGGUCUUCAGCGAGGCAUAUAUGAAUUCCUUUGUCGCAGGUGGCGAUGCAGUCCCGACGCUAAUCAUGUUGAUGGGCGAGGUGGUCAAGGCCUCUCUCCUUUACGAGGUGGGCUAAUCGUGUCAGUUUUUUUUCUACAUCUUUGUGGUAGAAACUAAGAAAUCAUAUUAUUUAGGUCAAAGAAAUAUAAUCUUGUAAUCUGAACAUCUAAAGAUAUGUAAUCUGCAUAUGAAGAUUACAACACUGAAGCAAAUUACUACUGACGAGUCAUAUGUUUUGUCAGUUGCUAACAUUUGUAUUUUAUCAGCAAUAAGACUGCAUCACCUCAUAAUUUUAGUGAAUAUUACUUAUUUUUGUUA
Sequence
(XR_001541628.2):
UGGAUCGGAUCGAUCAUCUCCUGUCGCUUGCCCCUUCCCUGUCGCGAUGGAGAGCGAUGCCGCGCCACAGCCGAGCACUGCCAACGCCGGGCGCCACCACCCUGCUGGCUGCCGCCGAGCGCUGCCACCCCACCUGCCGCCGAGCAGCCCACCAUCCAUCUGCAAUCGUGCAUCUGAUCUUCCAAUUGAUGCUUCUAUAUGAAAUGACUGACGGUGAGGACAUCCAGCGUCUUGCGUCUUGUAUGUGAUAAUGGCACUGGAGUGGUCAAGAAUGGAGUUAGGGAGGUAGAGCCAGAGGCAAGGAGUAGGAGGGAAAGGGGAUGGUGCCUCUUCUUGGCUGCUUCAGUUCUUUUUUCCUCUCGGCCACAAGCAAAUCAGCCAAGACUCUGUUUUAGAUGGCGCCGAAGGCCACGGUGAGGCAGGGUUCGACAGAGGGAUAGCCGUGACACUGUAGAUGAGGGCACCAGAGGCUGCCAUUACGCCGUCGAGGAGGUGGGGGAUGCUUCCAUGGUUUUUCUCGCACCGGUGGGCGAGGCAGCCGUGAUAUCUCUCCUGGAUCUCAGUAAGCAAGCAAGCACGUUCCCAGGGCUAUCGAGGAGGCAGUCACAAUGACCCUGAUGGUCUUCAGCGAGGCAUAUAUGAAUUCCUUUGUCGCAGGUGGCGAUGCAGUCCCGACGCUAAUCAUGUUGAUGGGCGAGGUGGUCAAGGCCUCUCUCCUUUACGAGGUGGGCUAAUCGUGUCAGUUUUUUUUCUACAUCUUUGUGGUAGAAACUAAGAAAUCAUAUUAUUUAGGUCAAAGAAAUAUAAUCUUGUAAUCUGAACAUCUAAAGAUAUGUAAUCUGCAUAUGAAGAUUACAACACUGAAGCAAAUUACUACUGACGAGUCAUAUGUUUUGUCAGUUGCUAACAUUUGUAUUUUAUCAGCAAUAAGACUGCAUCACCUCAUAAUUUUAGUGAAUAUUACUUAUUUUUGUUA
Sequence
(XR_001541629.2):
ACUCUAAAUUCUCGUGUCGACUCCACUCGAAGCCUCUUCGUCUCCCUGCGACUUAGCUCCGCCCGCCGCCUGCGCCGAUCUCCAUUCCGUGAGCAGAGCAGAGUCAACUUCCGCCGAAUCUGCUCACCAUUCAAUCCAAUCCUCUUUCUCAUCUCUCUCUCCGCAUCCUCGGUGGUGAGCAUCCAUUCAAUCCAAUCCUCUUUCUCAUCUCUCUCUCCGCAUCCUCGGUGGUGAGCAUCCAUUCAAUCCAAUCCUCUUUCUCAUCUCUCUCUCUCUCCGCAUCCUCGGUGCUUCUAUAUGAAAUGACUGACGGUGAGGACAUCCAGCGUCUUGCGUCUUGUAUGUGAUAAUGGCACUGGAGUGGUCAAGGUCAGAUUUUCUUUUUUUACUCUUAAGCCUUAACUAGUGGAGUAACUGCUAUGUAUGCCCCAUCUCCUGCAAAAAAAAUUUUCUGAAUAUGCCGCCCUUUUGCAUAUUUGAUCAUGUAGGCUAGUUUCAUUGGGGAUGAUUUGUUGUUGGGUAUUUUUAUCAGAGCUAUGUAGAUUGAGUAUGACAAUUGGGUAUUUUUAUCAGAGCUAUGUAGAUUACUUAUUUGUGUCUUUUUCUCCAAUCUGCUUCACCAAGAAUGGAGUUAGGGAGGUAGAGCCAGAGGCAAGGAGUAGGAGGGAAAGGGGAUGGUGCCUCUUCUUGGCUGCUUCAGUUCUUUUUUCCUCUCGGCCACAAGCAAAUCAGCCAAGACUCUGUUUUAGAUGGCGCCGAAGGCCACGGUGAGGCAGGGUUCGACAGAGGGAUAGCCGUGACACUGUAGAUGAGGGCACCAGAGGCUGCCAUUACGCCGUCGAGGAGGUGGGGGAUGCUUCCAUGGUUUUUCUCGCACCGGUGGGCGAGGCAGCCGUGAUAUCUCUCCUGGAUCUCAGUAAGCAAGCAAGCACGUUCCCAGGGCUAUCGAGGAGGCAGUCACAAUGACCCUGAUGGUCUUCAGCGAGGCAUAUAUGAAUUCCUUUGUCGCAGGUGGCGAUGCAGUCCCGACGCUAAUCAUGUUGAUGGGCGAGGUGGUCAAGGCCUCUCUCCUUUACGAGGUGGGCUAAUCGUGUCAGUUUUUUUUCUACAUCUUUGUGGUAGAAACUAAGAAAUCAUAUUAUUUAGGUCAAAGAAAUAUAAUCUUGUAAUCUGAACAUCUAAAGAUAUGUAAUCUGCAUAUGAAGAUUACAACACUGAAGCAAAUUACUACUGACGAGUCAUAUGUUUUGUCAGUUGCUAACAUUUGUAUUUUAUCAGCAAUAAGACUGCAUCACCUCAUAAUUUUAGUGAAUAUUACUUAUUUUUGUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
1.22%
ME_num:
MEP:
36.59%
HE_num:
HEP:
61.99%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.75
Avg Expression:
30.99
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.8589926827831 | 0.00179088602840488 |
| 2 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.43873821038604 | 0.0301074159419931 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.51168303612671 | 6.0998772991886e-10 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 1.00190391184555 | 1.49250254194759e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.01830406269687 | 2.82955293143114e-08 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 1.30992499070586 | 0.00011035047402838 |
| 7 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.3533496256793 | 0.0363274945359997 |
| 8 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.353410501166 | 0.0367461779151978 |
| 9 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.353544896186 | 0.0364137904610429 |
| 10 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.63177709089308 | 5.70067239292279e-07 |