Chr:
Chr1
Start:
39636941
End:
39640872
Strand:
+
Ref_name:
LOC9266385
Sequence
(XR_001543461.2):
UCACUGUGACGGCCUUUCCACACCGCUCCCCCACCACCACGCGCGCCGCCUCGCCCCACCUCGCGCCGUCGCCGCCGCCGCCGCAGCUCCCUCCUGCUCCACUCCCUCGCCCUACUCCAGCUGCUGCCUGUCCCUCCCACCGAGCAGCCGGAUCUCCCAGUGAGUAGGCCCGGGCCGCCAGAUCCGGUGACCCCGGUCUCCUCGCCGGUGUAUCCGGCGCCGCAGGGAGGGACGAGAGCCGCCGGCGCUGCCGCCCUUUCUCCUCUCUCAUCCCUGCCACGCCACUGCCUCCCUCGCCCUAGACCUCUACGCCUCGAUCAGUGCGGUGUAAUAUGGCUCGGGGACCGUCUGACUCAUCGACCUUGACAGAAGGUGAGAAGGGAGGGGAGAGCGCCGACUCGGCCACGACCGCGACGAAGACAGCCGCGGCUCGGCGUCGGCAACGACGGCUACCUGGGCGUAUUUUCAUAUUCAGACAGUUUUGGAAGCUGCAAGUACACAUGGCUUGCCUCUUGAAUGUACAUCAAAGGAGUUUUUUAUAUGCUGCUGUACUGUGUUCCUUUCACUGAUGUGUGCUAUAUGCUCCAAGCGCAUAAAUUACAGUGUUCUAAAAAUCGCCAUUAGGCGGCACCUCGGCGCCGUGAUUAGCCCCUCGGUGGCGAGUUCGGCGGCUGCCCUGCCGCGACGGUCAACAUCGGUCCACCUCGGCGCCUAGGCGGCCUAGGCACGGUGGCGACUAGUCGACGAGGCGGCCGACUGAGCUAGCUAUGCGGGCUGCUGUGGCGGGUAUAUAAGGUGGGUGCAUCCUGGCUGCUUGACUUAAUCCCAAAAUCAGAGUGCGUGAAGGGGCGGCUAGGGUUUGGAGCUGCCUUAGGACGGUGCGCAGGCGCAGGCGCAGGCGCAGCCGCCAUAGUAGUUUGAUCCGCCGGCAGCUCAGCUGCUCUGCUUCUCUCCGCGACCAAGCGACUAGCCUACCAUCCUCUGUUCUUUUUCACACGGUCGUGCUUGCGCAGUUGUGCCUCGACUCGUCGAUGACUCUGCUCAGGUGCUCAGGUGCUCUGCUCUGCCCCCAUCCUUCCUGCCAACCACCGUGUUCUGCUCCAAGCUGCCGACACCAGCACCACCAUGGUGAACACUGGCGAAUCGAGCAAGAUCAAAGAACAUAUUGGCCACAUUAUACCAUGCAAAGUCUAUUCACAUCACAAGACAUUGGCCUUGAUGAGGAAGCACACGAAGAAGAGAGAUACCAUAAGGCCGGGUGUGACUAGAUUUGCUUUAGCAUUUCUAACCUUGCAAAGCUUGAUUGAGAAGAAGCGUGAGCUAAGGGCAAUGGCGCUUAGUGUGGAGUGGGAUUGUGGGAACAAUGCACCCGCACUAAAAAAAGCAAAAGGCAAGAUAGCUACCUCUACACUAAUGAGUAGGACCUUUUGGAAUGAUGUUUCUCAGUGUUUGAAGGUUUUUGAGCCAUUAGUCAAAGUACUUCACAUGGUUAAUAGUGAUGGUCUAUCCUGACCUUCAUCUGUGGACAAAUUCUAGAGGCAAAGAAGGAAAUCAUGGUAGCUGCAAAAAACUUGGAGAACACCUACAAUCCCAUCUUUGAACAUAUUGCUAAAAAGAUGGAGGGUAGGCUUGAUGCUCCACUGCAUUUGACAGCAUAUAUAUUGAUUCCUUAUUACACUUACCAUGAUCAAUCUAUCUUUUUGGAUCCUUCUAUCAUGGAUGGUUUCUUUGAUUGUAUUGAAACCUUUUAUGUGGUGAUGAUGAUCUUCAAGCUCAAGUGAUCAAUGAACUUCCCAAGUUUAAGGACUAGCUAGGGGCAUUUGGGAAACCUGCUGCGGAACUGGAUGUCAAAAAUCGCAUUUCUCCUGCUGACUGGUGGGCAGCAUAUGGAUGCCAUGUUCCUAAUUUGCAAAAGAUGGCCAUAAGGAUCCUCUCCUUGACAUAUAGUUCCUCUGGUUGUGAAAGGAAUUGGAGUAUUUUUGAUAUGGUUCAUACAAAGAAGAGAAAUAGGCUUGGGGCUGGUCGCCUAAACAACUUAGUCUAUGUUCAAUUCAAUGCAAGGUUGCUGAAAAGGGCUGAGAAACGCAAUGGAAAAAUAACAAAGAUGUGCUCCUAGCUACAGAUGCAUUCCAUGCGCAAGGGUGGAUCACUGAUGGUGGAGAUGAGGAAGAUAUUGAUCCCAUUUCAGGACUUCCAUUCAGUCUCAUCUAUGAAGCAAGUGGGGCUACUAAAGCCAU
Sequence
(XR_001543472.2):
UCACUGUGACGGCCUUUCCACACCGCUCCCCCACCACCACGCGCGCCGCCUCGCCCCACCUCGCGCCGUCGCCGCCGCCGCCGCAGCUCCCUCCUGCUCCACUCCCUCGCCCUACUCCAGCUGCUGCCUGUCCCUCCCACCGAGCAGCCGGAUCUCCCAGUGAGUAGGCCCGGGCCGCCAGAUCCGGUGACCCCGGUCUCCUCGCCGGUGUAUCCGGCGCCGCAGGGAGGGACGAGAGCCGCCGGCGCUGCCGCCCUUUCUCCUCUCUCAUCCCUGCCACGCCACUGCCUCCCUCGCCCUAGACCUCUACGCCUCGAUCAGUGCGGUGUAAUAUGGCUCGGGGACCGUCUGACUCAUCGACCUUGACAGAAGGUGAGAAGGGAGGGGAGAGCGCCGACUCGGCCACGACCGCGACGAAGACAGCCGCGGCUCGGCGUCGGCAACGACGGCUACCUGGGCGUAUUUUCAUAUUCAGACAGUUUUGGAAGCUGCAAGUACACAUGGCUUGCCUCUUGAAUGUACAUCAAAGGAGUUUUUUAUAUGCUGCUGUACUGUGUUCCUUUCACUGAUGUGUGCUAUAUGCUCCAAGCGCAUAAAUUACAGUGUUCUAAAAAUCGCCAUUAGGCGGCACCUCGGCGCCGUGAUUAGCCCCUCGGUGGCGAGUUCGGCGGCUGCCCUGCCGCGACGGUCAACAUCGGUCCACCUCGGCGCCUAGGCGGCCUAGGCACGGUGGCGACUAGUCGACGAGGCGGCCGACUGAGCUAGCUAUGCGGGCUGCUGUGGCGGGUAUAUAAGUUGUGCCUCGACUCGUCGAUGACUCUGCUCAGGUGCUCAGGUGCUCUGCUCUGCCCCCAUCCUUCCUGCCAACCACCGUGUUCUGCUCCAAGCUGCCGACACCAGCACCACCAUGGUGAACACUGGCGAAUCGAGCAAGAUCAAAGAACAUAUUGGCCACAUUAUACCAUGCAAAGUCUAUUCACAUCACAAGACAUUGGCCUUGAUGAGGAAGCACACGAAGAAGAGAGAUACCAUAAGGCCGGGUGUGACUAGAUUUGCUUUAGCAUUUCUAACCUUGCAAAGCUUGAUUGAGAAGAAGCGUGAGCUAAGGGCAAUGGCGCUUAGUGUGGAGUGGGAUUGUGGGAACAAUGCACCCGCACUAAAAAAAGCAAAAGGCAAGAUAGCUACCUCUACACUAAUGAGUAGGACCUUUUGGAAUGAUGUUUCUCAGUGUUUGAAGGUUUUUGAGCCAUUAGUCAAAGUACUUCACAUGGUUAAUAGUGAUGGUCUAUCCUGACCUUCAUCUGUGGACAAAUUCUAGAGGCAAAGAAGGAAAUCAUGGUAGCUGCAAAAAACUUGGAGAACACCUACAAUCCCAUCUUUGAACAUAUUGCUAAAAAGAUGGAGGGUAGGCUUGAUGCUCCACUGCAUUUGACAGCAUAUAUAUUGAUUCCUUAUUACACUUACCAUGAUCAAUCUAUCUUUUUGGAUCCUUCUAUCAUGGAUGGUUUCUUUGAUUGUAUUGAAACCUUUUAUGUGGUGAUGAUGAUCUUCAAGCUCAAGUGAUCAAUGAACUUCCCAAGUUUAAGGACUAGCUAGGGGCAUUUGGGAAACCUGCUGCGGAACUGGAUGUCAAAAAUCGCAUUUCUCCUGCUGACUGGUGGGCAGCAUAUGGAUGCCAUGUUCCUAAUUUGCAAAAGAUGGCCAUAAGGAUCCUCUCCUUGACAUAUAGUUCCUCUGGUUGUGAAAGGAAUUGGAGUAUUUUUGAUAUGGUUCAUACAAAGAAGAGAAAUAGGCUUGGGGCUGGUCGCCUAAACAACUUAGUCUAUGUUCAAUUCAAUGCAAGGUUGCUGAAAAGGGCUGAGAAACGCAAUGGAAAAAUAACAAAGAUGUGCUCCUAGCUACAGAUGCAUUCCAUGCGCAAGGGUGGAUCACUGAUGGUGGAGAUGAGGAAGAUAUUGAUCCCAUUUCAGGACUUCCAUUCAGUCUCAUCUAUGAAGCAAGUGGGGCUACUAAAGCCAU
Sequence
(XR_001543475.2):
UCACUGUGACGGCCUUUCCACACCGCUCCCCCACCACCACGCGCGCCGCCUCGCCCCACCUCGCGCCGUCGCCGCCGCCGCCGCAGCUCCCUCCUGCUCCACUCCCUCGCCCUACUCCAGCUGCUGCCUGUCCCUCCCACCGAGCAGCCGGAUCUCCCAGUGAGUAGGCCCGGGCCGCCAGAUCCGGUGACCCCGGUCUCCUCGCCGGUGUAUCCGGCGCCGCAGGGAGGGACGAGAGCCGCCGGCGCUGCCGCCCUUUCUCCUCUCUCAUCCCUGCCACGCCACUGCCUCCCUCGCCCUAGACCUCUACGCCUCGAUCAGUGCGGUGUAAUAUGGCUCGGGGACCGUCUGACUCAUCGACCUUGACAGAAGGUGAGAAGGGAGGGGAGAGCGCCGACUCGGCCACGACCGCGACGAAGACAGCCGCGGCUCGGCGUCGGCAACGACGGCUACCUGGGCGUAUUUUCAUAUUCAGACAGUUUUGGAAGCUGCAAGUACACAUGGCUUGCCUCUUGAAUGUACAUCAAAGGAGUUUUUUAUAUGCUGCUGUACUGUGUUCCUUUCACUGAUGUGUGCUAUAUGCUCCAAGCGCAUAAAUUACAGUGUUCUAAAAAUCGCCAUUAGGCGGCACCUCGGCGCCGUGAUUAGCCCCUCGGUGGCGAGUUCGGCGGCUGCCCUGCCGCGACGGUCAACAUCGGUCCACCUCGGCGCCUAGGCGGCCUAGGCACGGUGGCGACUAGUCGACGAGGCGGCCGACUGAGCUAGCUAUGCGGGCUGCUGUGGCGGGUAUAUAAGGUGCUCUGCUCUGCCCCCAUCCUUCCUGCCAACCACCGUGUUCUGCUCCAAGCUGCCGACACCAGCACCACCAUGGUGAACACUGGCGAAUCGAGCAAGAUCAAAGAACAUAUUGGCCACAUUAUACCAUGCAAAGUCUAUUCACAUCACAAGACAUUGGCCUUGAUGAGGAAGCACACGAAGAAGAGAGAUACCAUAAGGCCGGGUGUGACUAGAUUUGCUUUAGCAUUUCUAACCUUGCAAAGCUUGAUUGAGAAGAAGCGUGAGCUAAGGGCAAUGGCGCUUAGUGUGGAGUGGGAUUGUGGGAACAAUGCACCCGCACUAAAAAAAGCAAAAGGCAAGAUAGCUACCUCUACACUAAUGAGUAGGACCUUUUGGAAUGAUGUUUCUCAGUGUUUGAAGGUUUUUGAGCCAUUAGUCAAAGUACUUCACAUGGUUAAUAGUGAUGGUCUAUCCUGACCUUCAUCUGUGGACAAAUUCUAGAGGCAAAGAAGGAAAUCAUGGUAGCUGCAAAAAACUUGGAGAACACCUACAAUCCCAUCUUUGAACAUAUUGCUAAAAAGAUGGAGGGUAGGCUUGAUGCUCCACUGCAUUUGACAGCAUAUAUAUUGAUUCCUUAUUACACUUACCAUGAUCAAUCUAUCUUUUUGGAUCCUUCUAUCAUGGAUGGUUUCUUUGAUUGUAUUGAAACCUUUUAUGUGGUGAUGAUGAUCUUCAAGCUCAAGUGAUCAAUGAACUUCCCAAGUUUAAGGACUAGCUAGGGGCAUUUGGGAAACCUGCUGCGGAACUGGAUGUCAAAAAUCGCAUUUCUCCUGCUGACUGGUGGGCAGCAUAUGGAUGCCAUGUUCCUAAUUUGCAAAAGAUGGCCAUAAGGAUCCUCUCCUUGACAUAUAGUUCCUCUGGUUGUGAAAGGAAUUGGAGUAUUUUUGAUAUGGUUCAUACAAAGAAGAGAAAUAGGCUUGGGGCUGGUCGCCUAAACAACUUAGUCUAUGUUCAAUUCAAUGCAAGGUUGCUGAAAAGGGCUGAGAAACGCAAUGGAAAAAUAACAAAGAUGUGCUCCUAGCUACAGAUGCAUUCCAUGCGCAAGGGUGGAUCACUGAUGGUGGAGAUGAGGAAGAUAUUGAUCCCAUUUCAGGACUUCCAUUCAGUCUCAUCUAUGAAGCAAGUGGGGCUACUAAAGCCAU
Sequence
(XR_003240261.1):
UCACUGUGACGGCCUUUCCACACCGCUCCCCCACCACCACGCGCGCCGCCUCGCCCCACCUCGCGCCGUCGCCGCCGCCGCCGCAGCUCCCUCCUGCUCCACUCCCUCGCCCUACUCCAGCUGCUGCCUGUCCCUCCCACCGAGCAGCCGGAUCUCCCAGUGAGUAGGCCCGGGCCGCCAGAUCCGGUGACCCCGGUCUCCUCGCCGGUGUAUCCGGCGCCGCAGGGAGGGACGAGAGCCGCCGGCGCUGCCGCCCUUUCUCCUCUCUCAUCCCUGCCACGCCACUGCCUCCCUCGCCCUAGACCUCUACGCCUCGAUCAGUGCGGUGUAAUAUGGCUCGGGGACCGUCUGACUCAUCGACCUUGACAGAAGGUGAGAAGGGAGGGGAGAGCGCCGACUCGGCCACGACCGCGACGAAGACAGCCGCGGCUCGGCGUCGGCAACGACGGCUACCUGGGCGUAUUUUCAUAUUCAGACAGUUUUGGAAGCUGCAAGUACACAUGGCUUGCCUCUUGAAUGUACAUCAAAGGAGUUUUUUAUAUGCUGCUGUACUGUGUUCCUUUCACUGAUGUGUGCUAUAUGCUCCAAGCGCAUAAAUUACAGUGUUCUAAAAAUCGCCAUUAGGCGGCACCUCGGCGCCGUGAUUAGCCCCUCGGUGGCGAGUUCGGCGGCUGCCCUGCCGCGACGGUCAACAUCGGUCCACCUCGGCGCCUAGGCGGCCUAGGCACGGUGGCGACUAGUCGACGAGGCGGCCGACUGAGCUAGCUAUGCGGGCUGCUGUGGCGGGUAUAUAAGGUGGGUGCAUCCUGGCUGCUUGACUUAAUCCCAAAAUCAGAGUGCGUGAAGGGGCGGCUAGGGUUUGGAGCUGCCUUAGGACGGUGCGCAGGCGCAGGCGCAGGCGCAGCCGCCAUAGUAGUUUGAUCCGCCGGCAGCUCAGCUGCUCUGCUUCUCUCCGCGACCAAGCGACUAGCCUACCAUCCUCUGUUCUUUUUCACACGGUCGUGCUUGCGCAGUUGUGCCUCGACUCGUCGAUGACUCUGCUCAGGUGCUCAGGUGCUCUGCUCUGCCCCCAUCCUUCCUGCCAACCACCGUGUUCUGCUCCAAGCUGCCGACACCAGCACCACCAUGGUGAACACUGGCGAAUCGAGCAAUGUUACUGGGGUAACAGAAGUACCCUAUCCUCAUUAGAGGAACUCCAAUGACAUGGGAUGGGAAUGAGGCAAAACAUUCAAUGAAUCAAACAAAGAUAGGGUCCAAUGCUUAUUAUGUGGUCACAAAAUGCAGGAUCAAAGAACAUAUUGGCCACAUUAUACCAUGCAAAGUCUAUUCACAUCACAAGACAUUGGCCUUGAUGAGGAAGCACACGAAGAAGAGAGAUACCAUAAGGCCGGGUGUGACUAGAUUUGCUUUAGCAUUUCUAACCUUGCAAAGCUUGAUUGAGAAGAAGCGUGAGCUAAGGGCAAUGGCGCUUAGUGUGGAGUGGGAUUGUGGGAACAAUGCACCCGCACUAAAAAAAGCAAAAGGCAAGAUAGCUACCUCUACACUAAUGAGUAGGACCUUUUGGAAUGAUGUUUCUCAGUGUUUGAAGGUUUUUGAGCCAUUAGUCAAAGUACUUCACAUGGUUAAUAGUGAUGGUCUAUCCUGACCUUCAUCUGUGGACAAAUUCUAGAGGCAAAGAAGGAAAUCAUGGUAGCUGCAAAAAACUUGGAGAACACCUACAAUCCCAUCUUUGAACAUAUUGCUAAAAAGAUGGAGGGUAGGCUUGAUGCUCCACUGCAUUUGACAGCAUAUAUAUUGAUUCCUUAUUACACUUACCAUGAUCAAUCUAUCUUUUUGGAUCCUUCUAUCAUGGAUGGUUUCUUUGAUUGUAUUGAAACCUUUUAUGUGGUGAUGAUGAUCUUCAAGCUCAAGUGAUCAAUGAACUUCCCAAGUUUAAGGACUAGCUAGGGGCAUUUGGGAAACCUGCUGCGGAACUGGAUGUCAAAAAUCGCAUUUCUCCUGCUGACUGGUGGGCAGCAUAUGGAUGCCAUGUUCCUAAUUUGCAAAAGAUGGCCAUAAGGAUCCUCUCCUUGACAUAUAGUUCCUCUGGUUGUGAAAGGAAUUGGAGUAUUUUUGAUAUGGUUCAUACAAAGAAGAGAAAUAGGCUUGGGGCUGGUCGCCUAAACAACUUAGUCUAUGUUCAAUUCAAUGCAAGGUUGCUGAAAAGGGCUGAGAAACGCAAUGGAAAAAUAACAAAGAUGUGCUCCUAGCUACAGAUGCAUUCCAUGCGCAAGGGUGGAUCACUGAUGGUGGAGAUGAGGAAGAUAUUGAUCCCAUUUCAGGACUUCCAUUCAGUCUCAUCUAUGAAGCAAGUGGGGCUACUAAAGCCAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
1.42%
ME_num:
MEP:
88.62%
HE_num:
HEP:
9.76%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.56
Avg Expression:
6.67
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.03561939494639 | 0.000101907861262682 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.64495068176778 | 1.11537692153396e-10 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.39970469712045 | 5.19083915058646e-11 |
4 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -1.07696148793719 | 0.00682378257439133 |
5 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.14190554172099 | 0.000984790156648803 |
6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.38771265972435 | 3.667419016468e-13 |