OSA-LNC9266385


Function Link


Basic Info

Chr:

Chr1

Start:

39636941

End:

39640872

Strand:

+

Ref_name:

LOC9266385

Sequence
(XR_001543461.2):

UCACUGUGACGGCCUUUCCACACCGCUCCCCCACCACCACGCGCGCCGCCUCGCCCCACCUCGCGCCGUCGCCGCCGCCGCCGCAGCUCCCUCCUGCUCCACUCCCUCGCCCUACUCCAGCUGCUGCCUGUCCCUCCCACCGAGCAGCCGGAUCUCCCAGUGAGUAGGCCCGGGCCGCCAGAUCCGGUGACCCCGGUCUCCUCGCCGGUGUAUCCGGCGCCGCAGGGAGGGACGAGAGCCGCCGGCGCUGCCGCCCUUUCUCCUCUCUCAUCCCUGCCACGCCACUGCCUCCCUCGCCCUAGACCUCUACGCCUCGAUCAGUGCGGUGUAAUAUGGCUCGGGGACCGUCUGACUCAUCGACCUUGACAGAAGGUGAGAAGGGAGGGGAGAGCGCCGACUCGGCCACGACCGCGACGAAGACAGCCGCGGCUCGGCGUCGGCAACGACGGCUACCUGGGCGUAUUUUCAUAUUCAGACAGUUUUGGAAGCUGCAAGUACACAUGGCUUGCCUCUUGAAUGUACAUCAAAGGAGUUUUUUAUAUGCUGCUGUACUGUGUUCCUUUCACUGAUGUGUGCUAUAUGCUCCAAGCGCAUAAAUUACAGUGUUCUAAAAAUCGCCAUUAGGCGGCACCUCGGCGCCGUGAUUAGCCCCUCGGUGGCGAGUUCGGCGGCUGCCCUGCCGCGACGGUCAACAUCGGUCCACCUCGGCGCCUAGGCGGCCUAGGCACGGUGGCGACUAGUCGACGAGGCGGCCGACUGAGCUAGCUAUGCGGGCUGCUGUGGCGGGUAUAUAAGGUGGGUGCAUCCUGGCUGCUUGACUUAAUCCCAAAAUCAGAGUGCGUGAAGGGGCGGCUAGGGUUUGGAGCUGCCUUAGGACGGUGCGCAGGCGCAGGCGCAGGCGCAGCCGCCAUAGUAGUUUGAUCCGCCGGCAGCUCAGCUGCUCUGCUUCUCUCCGCGACCAAGCGACUAGCCUACCAUCCUCUGUUCUUUUUCACACGGUCGUGCUUGCGCAGUUGUGCCUCGACUCGUCGAUGACUCUGCUCAGGUGCUCAGGUGCUCUGCUCUGCCCCCAUCCUUCCUGCCAACCACCGUGUUCUGCUCCAAGCUGCCGACACCAGCACCACCAUGGUGAACACUGGCGAAUCGAGCAAGAUCAAAGAACAUAUUGGCCACAUUAUACCAUGCAAAGUCUAUUCACAUCACAAGACAUUGGCCUUGAUGAGGAAGCACACGAAGAAGAGAGAUACCAUAAGGCCGGGUGUGACUAGAUUUGCUUUAGCAUUUCUAACCUUGCAAAGCUUGAUUGAGAAGAAGCGUGAGCUAAGGGCAAUGGCGCUUAGUGUGGAGUGGGAUUGUGGGAACAAUGCACCCGCACUAAAAAAAGCAAAAGGCAAGAUAGCUACCUCUACACUAAUGAGUAGGACCUUUUGGAAUGAUGUUUCUCAGUGUUUGAAGGUUUUUGAGCCAUUAGUCAAAGUACUUCACAUGGUUAAUAGUGAUGGUCUAUCCUGACCUUCAUCUGUGGACAAAUUCUAGAGGCAAAGAAGGAAAUCAUGGUAGCUGCAAAAAACUUGGAGAACACCUACAAUCCCAUCUUUGAACAUAUUGCUAAAAAGAUGGAGGGUAGGCUUGAUGCUCCACUGCAUUUGACAGCAUAUAUAUUGAUUCCUUAUUACACUUACCAUGAUCAAUCUAUCUUUUUGGAUCCUUCUAUCAUGGAUGGUUUCUUUGAUUGUAUUGAAACCUUUUAUGUGGUGAUGAUGAUCUUCAAGCUCAAGUGAUCAAUGAACUUCCCAAGUUUAAGGACUAGCUAGGGGCAUUUGGGAAACCUGCUGCGGAACUGGAUGUCAAAAAUCGCAUUUCUCCUGCUGACUGGUGGGCAGCAUAUGGAUGCCAUGUUCCUAAUUUGCAAAAGAUGGCCAUAAGGAUCCUCUCCUUGACAUAUAGUUCCUCUGGUUGUGAAAGGAAUUGGAGUAUUUUUGAUAUGGUUCAUACAAAGAAGAGAAAUAGGCUUGGGGCUGGUCGCCUAAACAACUUAGUCUAUGUUCAAUUCAAUGCAAGGUUGCUGAAAAGGGCUGAGAAACGCAAUGGAAAAAUAACAAAGAUGUGCUCCUAGCUACAGAUGCAUUCCAUGCGCAAGGGUGGAUCACUGAUGGUGGAGAUGAGGAAGAUAUUGAUCCCAUUUCAGGACUUCCAUUCAGUCUCAUCUAUGAAGCAAGUGGGGCUACUAAAGCCAU

Sequence
(XR_001543472.2):

UCACUGUGACGGCCUUUCCACACCGCUCCCCCACCACCACGCGCGCCGCCUCGCCCCACCUCGCGCCGUCGCCGCCGCCGCCGCAGCUCCCUCCUGCUCCACUCCCUCGCCCUACUCCAGCUGCUGCCUGUCCCUCCCACCGAGCAGCCGGAUCUCCCAGUGAGUAGGCCCGGGCCGCCAGAUCCGGUGACCCCGGUCUCCUCGCCGGUGUAUCCGGCGCCGCAGGGAGGGACGAGAGCCGCCGGCGCUGCCGCCCUUUCUCCUCUCUCAUCCCUGCCACGCCACUGCCUCCCUCGCCCUAGACCUCUACGCCUCGAUCAGUGCGGUGUAAUAUGGCUCGGGGACCGUCUGACUCAUCGACCUUGACAGAAGGUGAGAAGGGAGGGGAGAGCGCCGACUCGGCCACGACCGCGACGAAGACAGCCGCGGCUCGGCGUCGGCAACGACGGCUACCUGGGCGUAUUUUCAUAUUCAGACAGUUUUGGAAGCUGCAAGUACACAUGGCUUGCCUCUUGAAUGUACAUCAAAGGAGUUUUUUAUAUGCUGCUGUACUGUGUUCCUUUCACUGAUGUGUGCUAUAUGCUCCAAGCGCAUAAAUUACAGUGUUCUAAAAAUCGCCAUUAGGCGGCACCUCGGCGCCGUGAUUAGCCCCUCGGUGGCGAGUUCGGCGGCUGCCCUGCCGCGACGGUCAACAUCGGUCCACCUCGGCGCCUAGGCGGCCUAGGCACGGUGGCGACUAGUCGACGAGGCGGCCGACUGAGCUAGCUAUGCGGGCUGCUGUGGCGGGUAUAUAAGUUGUGCCUCGACUCGUCGAUGACUCUGCUCAGGUGCUCAGGUGCUCUGCUCUGCCCCCAUCCUUCCUGCCAACCACCGUGUUCUGCUCCAAGCUGCCGACACCAGCACCACCAUGGUGAACACUGGCGAAUCGAGCAAGAUCAAAGAACAUAUUGGCCACAUUAUACCAUGCAAAGUCUAUUCACAUCACAAGACAUUGGCCUUGAUGAGGAAGCACACGAAGAAGAGAGAUACCAUAAGGCCGGGUGUGACUAGAUUUGCUUUAGCAUUUCUAACCUUGCAAAGCUUGAUUGAGAAGAAGCGUGAGCUAAGGGCAAUGGCGCUUAGUGUGGAGUGGGAUUGUGGGAACAAUGCACCCGCACUAAAAAAAGCAAAAGGCAAGAUAGCUACCUCUACACUAAUGAGUAGGACCUUUUGGAAUGAUGUUUCUCAGUGUUUGAAGGUUUUUGAGCCAUUAGUCAAAGUACUUCACAUGGUUAAUAGUGAUGGUCUAUCCUGACCUUCAUCUGUGGACAAAUUCUAGAGGCAAAGAAGGAAAUCAUGGUAGCUGCAAAAAACUUGGAGAACACCUACAAUCCCAUCUUUGAACAUAUUGCUAAAAAGAUGGAGGGUAGGCUUGAUGCUCCACUGCAUUUGACAGCAUAUAUAUUGAUUCCUUAUUACACUUACCAUGAUCAAUCUAUCUUUUUGGAUCCUUCUAUCAUGGAUGGUUUCUUUGAUUGUAUUGAAACCUUUUAUGUGGUGAUGAUGAUCUUCAAGCUCAAGUGAUCAAUGAACUUCCCAAGUUUAAGGACUAGCUAGGGGCAUUUGGGAAACCUGCUGCGGAACUGGAUGUCAAAAAUCGCAUUUCUCCUGCUGACUGGUGGGCAGCAUAUGGAUGCCAUGUUCCUAAUUUGCAAAAGAUGGCCAUAAGGAUCCUCUCCUUGACAUAUAGUUCCUCUGGUUGUGAAAGGAAUUGGAGUAUUUUUGAUAUGGUUCAUACAAAGAAGAGAAAUAGGCUUGGGGCUGGUCGCCUAAACAACUUAGUCUAUGUUCAAUUCAAUGCAAGGUUGCUGAAAAGGGCUGAGAAACGCAAUGGAAAAAUAACAAAGAUGUGCUCCUAGCUACAGAUGCAUUCCAUGCGCAAGGGUGGAUCACUGAUGGUGGAGAUGAGGAAGAUAUUGAUCCCAUUUCAGGACUUCCAUUCAGUCUCAUCUAUGAAGCAAGUGGGGCUACUAAAGCCAU

Sequence
(XR_001543475.2):

UCACUGUGACGGCCUUUCCACACCGCUCCCCCACCACCACGCGCGCCGCCUCGCCCCACCUCGCGCCGUCGCCGCCGCCGCCGCAGCUCCCUCCUGCUCCACUCCCUCGCCCUACUCCAGCUGCUGCCUGUCCCUCCCACCGAGCAGCCGGAUCUCCCAGUGAGUAGGCCCGGGCCGCCAGAUCCGGUGACCCCGGUCUCCUCGCCGGUGUAUCCGGCGCCGCAGGGAGGGACGAGAGCCGCCGGCGCUGCCGCCCUUUCUCCUCUCUCAUCCCUGCCACGCCACUGCCUCCCUCGCCCUAGACCUCUACGCCUCGAUCAGUGCGGUGUAAUAUGGCUCGGGGACCGUCUGACUCAUCGACCUUGACAGAAGGUGAGAAGGGAGGGGAGAGCGCCGACUCGGCCACGACCGCGACGAAGACAGCCGCGGCUCGGCGUCGGCAACGACGGCUACCUGGGCGUAUUUUCAUAUUCAGACAGUUUUGGAAGCUGCAAGUACACAUGGCUUGCCUCUUGAAUGUACAUCAAAGGAGUUUUUUAUAUGCUGCUGUACUGUGUUCCUUUCACUGAUGUGUGCUAUAUGCUCCAAGCGCAUAAAUUACAGUGUUCUAAAAAUCGCCAUUAGGCGGCACCUCGGCGCCGUGAUUAGCCCCUCGGUGGCGAGUUCGGCGGCUGCCCUGCCGCGACGGUCAACAUCGGUCCACCUCGGCGCCUAGGCGGCCUAGGCACGGUGGCGACUAGUCGACGAGGCGGCCGACUGAGCUAGCUAUGCGGGCUGCUGUGGCGGGUAUAUAAGGUGCUCUGCUCUGCCCCCAUCCUUCCUGCCAACCACCGUGUUCUGCUCCAAGCUGCCGACACCAGCACCACCAUGGUGAACACUGGCGAAUCGAGCAAGAUCAAAGAACAUAUUGGCCACAUUAUACCAUGCAAAGUCUAUUCACAUCACAAGACAUUGGCCUUGAUGAGGAAGCACACGAAGAAGAGAGAUACCAUAAGGCCGGGUGUGACUAGAUUUGCUUUAGCAUUUCUAACCUUGCAAAGCUUGAUUGAGAAGAAGCGUGAGCUAAGGGCAAUGGCGCUUAGUGUGGAGUGGGAUUGUGGGAACAAUGCACCCGCACUAAAAAAAGCAAAAGGCAAGAUAGCUACCUCUACACUAAUGAGUAGGACCUUUUGGAAUGAUGUUUCUCAGUGUUUGAAGGUUUUUGAGCCAUUAGUCAAAGUACUUCACAUGGUUAAUAGUGAUGGUCUAUCCUGACCUUCAUCUGUGGACAAAUUCUAGAGGCAAAGAAGGAAAUCAUGGUAGCUGCAAAAAACUUGGAGAACACCUACAAUCCCAUCUUUGAACAUAUUGCUAAAAAGAUGGAGGGUAGGCUUGAUGCUCCACUGCAUUUGACAGCAUAUAUAUUGAUUCCUUAUUACACUUACCAUGAUCAAUCUAUCUUUUUGGAUCCUUCUAUCAUGGAUGGUUUCUUUGAUUGUAUUGAAACCUUUUAUGUGGUGAUGAUGAUCUUCAAGCUCAAGUGAUCAAUGAACUUCCCAAGUUUAAGGACUAGCUAGGGGCAUUUGGGAAACCUGCUGCGGAACUGGAUGUCAAAAAUCGCAUUUCUCCUGCUGACUGGUGGGCAGCAUAUGGAUGCCAUGUUCCUAAUUUGCAAAAGAUGGCCAUAAGGAUCCUCUCCUUGACAUAUAGUUCCUCUGGUUGUGAAAGGAAUUGGAGUAUUUUUGAUAUGGUUCAUACAAAGAAGAGAAAUAGGCUUGGGGCUGGUCGCCUAAACAACUUAGUCUAUGUUCAAUUCAAUGCAAGGUUGCUGAAAAGGGCUGAGAAACGCAAUGGAAAAAUAACAAAGAUGUGCUCCUAGCUACAGAUGCAUUCCAUGCGCAAGGGUGGAUCACUGAUGGUGGAGAUGAGGAAGAUAUUGAUCCCAUUUCAGGACUUCCAUUCAGUCUCAUCUAUGAAGCAAGUGGGGCUACUAAAGCCAU

Sequence
(XR_003240261.1):

UCACUGUGACGGCCUUUCCACACCGCUCCCCCACCACCACGCGCGCCGCCUCGCCCCACCUCGCGCCGUCGCCGCCGCCGCCGCAGCUCCCUCCUGCUCCACUCCCUCGCCCUACUCCAGCUGCUGCCUGUCCCUCCCACCGAGCAGCCGGAUCUCCCAGUGAGUAGGCCCGGGCCGCCAGAUCCGGUGACCCCGGUCUCCUCGCCGGUGUAUCCGGCGCCGCAGGGAGGGACGAGAGCCGCCGGCGCUGCCGCCCUUUCUCCUCUCUCAUCCCUGCCACGCCACUGCCUCCCUCGCCCUAGACCUCUACGCCUCGAUCAGUGCGGUGUAAUAUGGCUCGGGGACCGUCUGACUCAUCGACCUUGACAGAAGGUGAGAAGGGAGGGGAGAGCGCCGACUCGGCCACGACCGCGACGAAGACAGCCGCGGCUCGGCGUCGGCAACGACGGCUACCUGGGCGUAUUUUCAUAUUCAGACAGUUUUGGAAGCUGCAAGUACACAUGGCUUGCCUCUUGAAUGUACAUCAAAGGAGUUUUUUAUAUGCUGCUGUACUGUGUUCCUUUCACUGAUGUGUGCUAUAUGCUCCAAGCGCAUAAAUUACAGUGUUCUAAAAAUCGCCAUUAGGCGGCACCUCGGCGCCGUGAUUAGCCCCUCGGUGGCGAGUUCGGCGGCUGCCCUGCCGCGACGGUCAACAUCGGUCCACCUCGGCGCCUAGGCGGCCUAGGCACGGUGGCGACUAGUCGACGAGGCGGCCGACUGAGCUAGCUAUGCGGGCUGCUGUGGCGGGUAUAUAAGGUGGGUGCAUCCUGGCUGCUUGACUUAAUCCCAAAAUCAGAGUGCGUGAAGGGGCGGCUAGGGUUUGGAGCUGCCUUAGGACGGUGCGCAGGCGCAGGCGCAGGCGCAGCCGCCAUAGUAGUUUGAUCCGCCGGCAGCUCAGCUGCUCUGCUUCUCUCCGCGACCAAGCGACUAGCCUACCAUCCUCUGUUCUUUUUCACACGGUCGUGCUUGCGCAGUUGUGCCUCGACUCGUCGAUGACUCUGCUCAGGUGCUCAGGUGCUCUGCUCUGCCCCCAUCCUUCCUGCCAACCACCGUGUUCUGCUCCAAGCUGCCGACACCAGCACCACCAUGGUGAACACUGGCGAAUCGAGCAAUGUUACUGGGGUAACAGAAGUACCCUAUCCUCAUUAGAGGAACUCCAAUGACAUGGGAUGGGAAUGAGGCAAAACAUUCAAUGAAUCAAACAAAGAUAGGGUCCAAUGCUUAUUAUGUGGUCACAAAAUGCAGGAUCAAAGAACAUAUUGGCCACAUUAUACCAUGCAAAGUCUAUUCACAUCACAAGACAUUGGCCUUGAUGAGGAAGCACACGAAGAAGAGAGAUACCAUAAGGCCGGGUGUGACUAGAUUUGCUUUAGCAUUUCUAACCUUGCAAAGCUUGAUUGAGAAGAAGCGUGAGCUAAGGGCAAUGGCGCUUAGUGUGGAGUGGGAUUGUGGGAACAAUGCACCCGCACUAAAAAAAGCAAAAGGCAAGAUAGCUACCUCUACACUAAUGAGUAGGACCUUUUGGAAUGAUGUUUCUCAGUGUUUGAAGGUUUUUGAGCCAUUAGUCAAAGUACUUCACAUGGUUAAUAGUGAUGGUCUAUCCUGACCUUCAUCUGUGGACAAAUUCUAGAGGCAAAGAAGGAAAUCAUGGUAGCUGCAAAAAACUUGGAGAACACCUACAAUCCCAUCUUUGAACAUAUUGCUAAAAAGAUGGAGGGUAGGCUUGAUGCUCCACUGCAUUUGACAGCAUAUAUAUUGAUUCCUUAUUACACUUACCAUGAUCAAUCUAUCUUUUUGGAUCCUUCUAUCAUGGAUGGUUUCUUUGAUUGUAUUGAAACCUUUUAUGUGGUGAUGAUGAUCUUCAAGCUCAAGUGAUCAAUGAACUUCCCAAGUUUAAGGACUAGCUAGGGGCAUUUGGGAAACCUGCUGCGGAACUGGAUGUCAAAAAUCGCAUUUCUCCUGCUGACUGGUGGGCAGCAUAUGGAUGCCAUGUUCCUAAUUUGCAAAAGAUGGCCAUAAGGAUCCUCUCCUUGACAUAUAGUUCCUCUGGUUGUGAAAGGAAUUGGAGUAUUUUUGAUAUGGUUCAUACAAAGAAGAGAAAUAGGCUUGGGGCUGGUCGCCUAAACAACUUAGUCUAUGUUCAAUUCAAUGCAAGGUUGCUGAAAAGGGCUGAGAAACGCAAUGGAAAAAUAACAAAGAUGUGCUCCUAGCUACAGAUGCAUUCCAUGCGCAAGGGUGGAUCACUGAUGGUGGAGAUGAGGAAGAUAUUGAUCCCAUUUCAGGACUUCCAUUCAGUCUCAUCUAUGAAGCAAGUGGGGCUACUAAAGCCAU


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

7

LEP:

1.42%

ME_num:

436

MEP:

88.62%

HE_num:

48

HEP:

9.76%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot_apical_meristem

Tau :

0.56

Avg Expression:

6.67

Tip: OSA-LNC9266385 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA-1.035619394946390.000101907861262682
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA-1.644950681767781.11537692153396e-10
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-1.399704697120455.19083915058646e-11
4Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day-1.076961487937190.00682378257439133
5Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day1.141905541720990.000984790156648803
6Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-1.387712659724353.667419016468e-13