OSA-LNC9266370


Function Link


Basic Info

Chr:

Chr9

Start:

5834208

End:

5838402

Strand:

+

Ref_name:

LOC9266370

Sequence
(XR_001539952.2):

AAGUAACCACCGUCCUUUCUAUACACGUCUCCAUUUCUUUCCUCUCCUUUUCCUUCCCCUCCAAAUGCCAACCCAAACUCCACCCAAGCUGCAGCUAAUCAAAUCAUCCAUCAACUACUACUAUCUCCCGAUUAGAAAAAAAAGAAAGAAAUCAGGAAGAAAUCGCCCAUGGCGAAAGAAAAAAGAAUUCUUGUAGAGAAAAAAGGGGGACAAAACCCAGAGAUGAGAACUACAUGGUGGAUUGGCUCAUGAUAGUGCAAAUCAUUGGCUGAGAUGAGGAAAGGCAUGUUCAUCGACUCCAAGAUUGUUCACACCAAAUGUCAGGCAUCUGAACAAGACAGUCACCCUUAAGAACGAAACAGCUUCUUGCUCAACUCAAACGGGAUAGUUCUGGUGGAGAAGGUUCAACCUUAAUUAUGCAGUAUUGCUUCAGCAAUUGUUUUACACGGCAUCAGCGCCUCCAAGCAUGUGGCCACCAUCAACAGCCAUAGCGUCUGCAUAGUUUGCUUGAUGCUGGCUCCCAGCAUAUGGUGCAUUCCUUCGCACACGAUUGUGCUCAUCUGAUUUCAACAAAACAGGAAAAGGCUUGUCACAUAUACAUGGCAGAAUGUUCAUUUGUAAUGUUGAUAUCUCAGUUAUCAAGACAUUUUUUGCCCUACUAAUGCUUAUUGCACAUGUACGGGAUACCAUAAUUUGUAACCAUUUGGCCAUAGAUGUAAAAUGCGGACUGCAAAAAAAACAUUGGUGUUGUGGCCGACGAUAUUUCCGACGAAACGUUCAUUGAGUUA

Sequence
(XR_001539953.2):

AGAAGUAACCACCGUCCUUUCUAUACACGUCUCCAUUUCUUUCCUCUCCUUUUCCUUCCCCUCCAAAUGCCAACCCAAACUCCACCCAAGCUGCAGCUAAUCAAAUCAUCCAUCAACUACUACUAUCUCCCGAUUAGAAAAAAAAGAAAGAAAUCAGGAAGAAAUCGCCCAUGGCGAAAGAAAAAAGAAUUCUUGUAGAGAAAAAAGGGGGACAAAACCCAGAGAUGAGAACUACAUGGUGGAUUGGCUCAUGAUAGUGCAAAUCAUUGGCUGAGAUGAGGAAAGGCAUGUUCAUCGACUCCAAGAUUGUUCACACCAAAUGUCAGGCAUCUGAACAAGACAGUCACCCUUAAGAACGAAACAGCUUCUUGCUCAACUCAAACGGGAUAGUUCUGGUGGAGAAGGUUCAACCUUAAUUAUGCAGUAUUGCUUCAGAAAUCAGAGACUAUAGUCUUCACAUUGUUUGCUUGUUCAUCAUUGUAAGCAAUUGUUUUACACGGCAUCAGCGCCUCCAAGCAUGUGGCCACCAUCAACAGCCAUAGCGUCUGCAUAGUUUGCUUGAUGCUGGCUCCCAGCAUAUGGUGCAUUCCUUCGCACACGAUUGUGCUCAUCUGAUUUCAACAAAACAGGAAAAGGCUUGUCACAUAUACAUGGCAGAAUGUUCAUUUGUAAUGUUGAUAUCUCAGUUAUCAAGACAUUUUUUGCCCUACUAAUGCUUAUUGCACAUGUACGGGAUACCAUAAUUUGUAACCAUUUGGCCAUAGAUGUAAAAUGCGGACUGCAAAAAAAACAUUGGUGUUGUGGCCGACGAUAUUUCCGACGAAACGUUCAUUGAGUUA

Sequence
(XR_001539954.2):

UAGAAGUAACCACCGUCCUUUCUAUACACGUCUCCAUUUCUUUCCUCUCCUUUUCCUUCCCCUCCAAAUGCCAACCCAAACUCCACCCAAGCUGCAGCUAAUCAAAUCAUCCAUCAACUACUACUAUCUCCCGAUUAGAAAAAAAAGAAAGAAAUCAGGAAGAAAUCGCCCAUGGCGAAAGAAAAAAGAAUUCUUGUAGAGAAAAAAGGGGGACAAAACCCAGAGAUGAGAACUACAUGGUGGAUUGGCUCAUGAUAGUGCAAAUCAUUGGCUGAGAUGAGGAAAGGCAUGUUCAUCGACUCCAAGAUUGUUCACACCAAAUGUCAGGCAUCUGAACAAGACAGUCACCCUUAAGAACGAAACAGCUUCUUGCUCAACUCAAACGGGAUAGUUCUGGUGGAGAAGGUUCAACCUUAAUUAUGCAGUAUUGCUUCAGCCUGCAGGUUGAAGACGAUAUAUGAACUAACUGAGGACAAAUUUUUGCUGUAGAAAUCAGAGACUAUAGUCUUCACAUUGUUUGCUUGUUCAUCAUUGUAAGCAAUUGUUUUACACGGCAUCAGCGCCUCCAAGCAUGUGGCCACCAUCAACAGCCAUAGCGUCUGCAUAGUUUGCUUGAUGCUGGCUCCCAGCAUAUGGUGCAUUCCUUCGCACACGAUUGUGCUCAUCUGAUUUCAACAAAACAGGAAAAGGCUUGUCACAUAUACAUGGCAGAAUGUUCAUUUGUAAUGUUGAUAUCUCAGUUAUCAAGACAUUUUUUGCCCUACUAAUGCUUAUUGCACAUGUACGGGAUACCAUAAUUUGUAACCAUUUGGCCAUAGAUGUAAAAUGCGGACUGCAAAAAAAACAUUGGUGUUGUGGCCGACGAUAUUUCCGACGAAACGUUCAUUGAGUUA

Sequence
(XR_003238457.1):

GAAGUAGAAGUAACCACCGUCCUUUCUAUACACGUCUCCAUUUCUUUCCUCUCCUUUUCCUUCCCCUCCAAAUGCCAACCCAAACUCCACCCAAGCUGCAGCUAAUCAAAUCAUCCAUCAACUACUACUAUCUCCCGAUUAGAAAAAAAAGAAAGAAAUCAGGAAGAAAUCGCCCAUGGCGAAAGAAAAAAGAAUUCUUGUAGAGAAAAAAGGGGGACAAAACCCAGAGCGAUUUCUUGGUUGCCAGAGACCUGCAGACACGCGGCACGGAACAUCCGCCGCACGUUUUUGUCGCAGAUUCGUGUUCUUGAUGCUUCCCGGCUGCUGUUCUUGAUGGGAUGGAUGCGGUUCUUGGCGUCUCUGCUGAGUGCUGAGAUGUUUUGCAGCUCUUAAGAUGAUUUUUUUUAUCCGAUUUGGUUAUUUGAUUCUCUUAUCUUGGUAUGGUUUUCAACUUUGAAUGUAUUCGCCUAUUUAGCAUAGAACUUCGAAUGUAUUUGCCUAUUUUAGAAGAGAACUGACAGGAUUUCUUGAUAGAUUUUCCUCCACCUGAUUGAGGAGUGUAAUUUGGACAGUGAUGGAUCCUUCUGACGGGGAACUCCUAAUCUCCUUUUGUCAAGAGGCAAUCCUCUGGCAGAUGCUGUUCUGAUUGAUUGUUUGGUCACUCAACAACGCAAAUCAUGGGCAUCUUGUGGCUAUCUAGGGUUGGAUUUGGGGCUACACCAUUUCUUCUUCAUAGAUCUUUGUUUUCGCAAAUCUUGCAAUCUCUUUUAGCCUUUUCUGGAGGAUGACUAUGGUAGAGAUUGUUCUAAAUUCUUGGUUUGAUUUUUCUUGGAUUUAUUAGUUGAUCUUGUGAAUUGCAUUUCCCCUUCAUUCAAGCUUCCCAAAGUUCUACUGGUUGGUUAGUUAUUCAGAUUUGAUUUGAUUCUUUUUACUUAUCAGCAACUUGGGUUGAUUUCAGAUGAGAACUACAUGGUGGAUUGGCUCAUGAUAGUGCAAAUCAUUGGCUGAGAUGAGGAAAGGCAUGUUCAUCGACUCCAAGAUUGUUCACACCAAAUGUCAGGCAUCUGAACAAGACAGUCACCCUUAAGAACGAAACAGCUUCUUGCUCAACUCAAACGGGAUAGUUCUGGUGGAGAAGGUUCAACCUUAAUUAUGCAGUAUUGCUUCAGCAAUUGUUUUACACGGCAUCAGCGCCUCCAAGCAUGUGGCCACCAUCAACAGCCAUAGCGUCUGCAUAGUUUGCUUGAUGCUGGCUCCCAGCAUAUGGUGCAUUCCUUCGCACACGAUUGUGCUCAUCUGAUUUCAACAAAACAGGAAAAGGCUUGUCACAUAUACAUGGCAGAAUGUUCAUUUGUAAUGUUGAUAUCUCAGUUAUCAAGACAUUUUUUGCCCUACUAAUGCUUAUUGCACAUGUACGGGAUACCAUAAUUUGUAACCAUUUGGCCAUAGAUGUAAAAUGCGGACUGCAAAAAAAACAUUGGUGUUGUGGCCGACGAUAUUUCCGACGAAACGUUCAUUGAGUUA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

7

LEP:

1.42%

ME_num:

13

MEP:

2.64%

HE_num:

471

HEP:

95.73%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

carpel

Tau :

0.53

Avg Expression:

43.42

Tip: OSA-LNC9266370 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1.00867905655435.74012479612632e-10
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA1.173723369478091.5378356306793e-08
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN1.233564289778965.66847738368702e-14