Chr:
Chr9
Start:
5834208
End:
5838402
Strand:
+
Ref_name:
LOC9266370
Sequence
(XR_001539952.2):
AAGUAACCACCGUCCUUUCUAUACACGUCUCCAUUUCUUUCCUCUCCUUUUCCUUCCCCUCCAAAUGCCAACCCAAACUCCACCCAAGCUGCAGCUAAUCAAAUCAUCCAUCAACUACUACUAUCUCCCGAUUAGAAAAAAAAGAAAGAAAUCAGGAAGAAAUCGCCCAUGGCGAAAGAAAAAAGAAUUCUUGUAGAGAAAAAAGGGGGACAAAACCCAGAGAUGAGAACUACAUGGUGGAUUGGCUCAUGAUAGUGCAAAUCAUUGGCUGAGAUGAGGAAAGGCAUGUUCAUCGACUCCAAGAUUGUUCACACCAAAUGUCAGGCAUCUGAACAAGACAGUCACCCUUAAGAACGAAACAGCUUCUUGCUCAACUCAAACGGGAUAGUUCUGGUGGAGAAGGUUCAACCUUAAUUAUGCAGUAUUGCUUCAGCAAUUGUUUUACACGGCAUCAGCGCCUCCAAGCAUGUGGCCACCAUCAACAGCCAUAGCGUCUGCAUAGUUUGCUUGAUGCUGGCUCCCAGCAUAUGGUGCAUUCCUUCGCACACGAUUGUGCUCAUCUGAUUUCAACAAAACAGGAAAAGGCUUGUCACAUAUACAUGGCAGAAUGUUCAUUUGUAAUGUUGAUAUCUCAGUUAUCAAGACAUUUUUUGCCCUACUAAUGCUUAUUGCACAUGUACGGGAUACCAUAAUUUGUAACCAUUUGGCCAUAGAUGUAAAAUGCGGACUGCAAAAAAAACAUUGGUGUUGUGGCCGACGAUAUUUCCGACGAAACGUUCAUUGAGUUA
Sequence
(XR_001539953.2):
AGAAGUAACCACCGUCCUUUCUAUACACGUCUCCAUUUCUUUCCUCUCCUUUUCCUUCCCCUCCAAAUGCCAACCCAAACUCCACCCAAGCUGCAGCUAAUCAAAUCAUCCAUCAACUACUACUAUCUCCCGAUUAGAAAAAAAAGAAAGAAAUCAGGAAGAAAUCGCCCAUGGCGAAAGAAAAAAGAAUUCUUGUAGAGAAAAAAGGGGGACAAAACCCAGAGAUGAGAACUACAUGGUGGAUUGGCUCAUGAUAGUGCAAAUCAUUGGCUGAGAUGAGGAAAGGCAUGUUCAUCGACUCCAAGAUUGUUCACACCAAAUGUCAGGCAUCUGAACAAGACAGUCACCCUUAAGAACGAAACAGCUUCUUGCUCAACUCAAACGGGAUAGUUCUGGUGGAGAAGGUUCAACCUUAAUUAUGCAGUAUUGCUUCAGAAAUCAGAGACUAUAGUCUUCACAUUGUUUGCUUGUUCAUCAUUGUAAGCAAUUGUUUUACACGGCAUCAGCGCCUCCAAGCAUGUGGCCACCAUCAACAGCCAUAGCGUCUGCAUAGUUUGCUUGAUGCUGGCUCCCAGCAUAUGGUGCAUUCCUUCGCACACGAUUGUGCUCAUCUGAUUUCAACAAAACAGGAAAAGGCUUGUCACAUAUACAUGGCAGAAUGUUCAUUUGUAAUGUUGAUAUCUCAGUUAUCAAGACAUUUUUUGCCCUACUAAUGCUUAUUGCACAUGUACGGGAUACCAUAAUUUGUAACCAUUUGGCCAUAGAUGUAAAAUGCGGACUGCAAAAAAAACAUUGGUGUUGUGGCCGACGAUAUUUCCGACGAAACGUUCAUUGAGUUA
Sequence
(XR_001539954.2):
UAGAAGUAACCACCGUCCUUUCUAUACACGUCUCCAUUUCUUUCCUCUCCUUUUCCUUCCCCUCCAAAUGCCAACCCAAACUCCACCCAAGCUGCAGCUAAUCAAAUCAUCCAUCAACUACUACUAUCUCCCGAUUAGAAAAAAAAGAAAGAAAUCAGGAAGAAAUCGCCCAUGGCGAAAGAAAAAAGAAUUCUUGUAGAGAAAAAAGGGGGACAAAACCCAGAGAUGAGAACUACAUGGUGGAUUGGCUCAUGAUAGUGCAAAUCAUUGGCUGAGAUGAGGAAAGGCAUGUUCAUCGACUCCAAGAUUGUUCACACCAAAUGUCAGGCAUCUGAACAAGACAGUCACCCUUAAGAACGAAACAGCUUCUUGCUCAACUCAAACGGGAUAGUUCUGGUGGAGAAGGUUCAACCUUAAUUAUGCAGUAUUGCUUCAGCCUGCAGGUUGAAGACGAUAUAUGAACUAACUGAGGACAAAUUUUUGCUGUAGAAAUCAGAGACUAUAGUCUUCACAUUGUUUGCUUGUUCAUCAUUGUAAGCAAUUGUUUUACACGGCAUCAGCGCCUCCAAGCAUGUGGCCACCAUCAACAGCCAUAGCGUCUGCAUAGUUUGCUUGAUGCUGGCUCCCAGCAUAUGGUGCAUUCCUUCGCACACGAUUGUGCUCAUCUGAUUUCAACAAAACAGGAAAAGGCUUGUCACAUAUACAUGGCAGAAUGUUCAUUUGUAAUGUUGAUAUCUCAGUUAUCAAGACAUUUUUUGCCCUACUAAUGCUUAUUGCACAUGUACGGGAUACCAUAAUUUGUAACCAUUUGGCCAUAGAUGUAAAAUGCGGACUGCAAAAAAAACAUUGGUGUUGUGGCCGACGAUAUUUCCGACGAAACGUUCAUUGAGUUA
Sequence
(XR_003238457.1):
GAAGUAGAAGUAACCACCGUCCUUUCUAUACACGUCUCCAUUUCUUUCCUCUCCUUUUCCUUCCCCUCCAAAUGCCAACCCAAACUCCACCCAAGCUGCAGCUAAUCAAAUCAUCCAUCAACUACUACUAUCUCCCGAUUAGAAAAAAAAGAAAGAAAUCAGGAAGAAAUCGCCCAUGGCGAAAGAAAAAAGAAUUCUUGUAGAGAAAAAAGGGGGACAAAACCCAGAGCGAUUUCUUGGUUGCCAGAGACCUGCAGACACGCGGCACGGAACAUCCGCCGCACGUUUUUGUCGCAGAUUCGUGUUCUUGAUGCUUCCCGGCUGCUGUUCUUGAUGGGAUGGAUGCGGUUCUUGGCGUCUCUGCUGAGUGCUGAGAUGUUUUGCAGCUCUUAAGAUGAUUUUUUUUAUCCGAUUUGGUUAUUUGAUUCUCUUAUCUUGGUAUGGUUUUCAACUUUGAAUGUAUUCGCCUAUUUAGCAUAGAACUUCGAAUGUAUUUGCCUAUUUUAGAAGAGAACUGACAGGAUUUCUUGAUAGAUUUUCCUCCACCUGAUUGAGGAGUGUAAUUUGGACAGUGAUGGAUCCUUCUGACGGGGAACUCCUAAUCUCCUUUUGUCAAGAGGCAAUCCUCUGGCAGAUGCUGUUCUGAUUGAUUGUUUGGUCACUCAACAACGCAAAUCAUGGGCAUCUUGUGGCUAUCUAGGGUUGGAUUUGGGGCUACACCAUUUCUUCUUCAUAGAUCUUUGUUUUCGCAAAUCUUGCAAUCUCUUUUAGCCUUUUCUGGAGGAUGACUAUGGUAGAGAUUGUUCUAAAUUCUUGGUUUGAUUUUUCUUGGAUUUAUUAGUUGAUCUUGUGAAUUGCAUUUCCCCUUCAUUCAAGCUUCCCAAAGUUCUACUGGUUGGUUAGUUAUUCAGAUUUGAUUUGAUUCUUUUUACUUAUCAGCAACUUGGGUUGAUUUCAGAUGAGAACUACAUGGUGGAUUGGCUCAUGAUAGUGCAAAUCAUUGGCUGAGAUGAGGAAAGGCAUGUUCAUCGACUCCAAGAUUGUUCACACCAAAUGUCAGGCAUCUGAACAAGACAGUCACCCUUAAGAACGAAACAGCUUCUUGCUCAACUCAAACGGGAUAGUUCUGGUGGAGAAGGUUCAACCUUAAUUAUGCAGUAUUGCUUCAGCAAUUGUUUUACACGGCAUCAGCGCCUCCAAGCAUGUGGCCACCAUCAACAGCCAUAGCGUCUGCAUAGUUUGCUUGAUGCUGGCUCCCAGCAUAUGGUGCAUUCCUUCGCACACGAUUGUGCUCAUCUGAUUUCAACAAAACAGGAAAAGGCUUGUCACAUAUACAUGGCAGAAUGUUCAUUUGUAAUGUUGAUAUCUCAGUUAUCAAGACAUUUUUUGCCCUACUAAUGCUUAUUGCACAUGUACGGGAUACCAUAAUUUGUAACCAUUUGGCCAUAGAUGUAAAAUGCGGACUGCAAAAAAAACAUUGGUGUUGUGGCCGACGAUAUUUCCGACGAAACGUUCAUUGAGUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
1.42%
ME_num:
MEP:
2.64%
HE_num:
HEP:
95.73%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.53
Avg Expression:
43.42
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.0086790565543 | 5.74012479612632e-10 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.17372336947809 | 1.5378356306793e-08 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.23356428977896 | 5.66847738368702e-14 |