Chr:
Chr3
Start:
1131775
End:
1135165
Strand:
-
Ref_name:
LOC9266310
Sequence
(XR_001544094.2):
CCACCACCUCUCGCCGCCUAUAAAUAUAAGGCGAGCCCUCCCCUUUUCUCCACACAUCAACAGAGCCUCGAGCUCCCUUUCUCUCUCUCCAUCCAUGGCCGAUCGUCGACGCCGUCGGUCGAUCUCCCCAUCCGUAGCUCCACCUCCCCUAUCCUCGCGCCACCGGCUUCGCCUCCAUCCGGCGAGUCCGUUUUUCCCCUUUCCCCUCUCCCUCCACCUCUAAGUCAAGCCACCACCGCCAUCAUCCAUGCCGGCUCGAGGUGAGCCCUUGCCGCCGCCGUUCCGGCUAUAUAUCUCUCCCUCUCGGCCAGCCACCGACCUCCCCGGGUGCGCGUCGCUCGGGAACACGCGUGGCCGCUGUCGUCGAGGCCGUUCAUCCACCGGAGCAUCGGCGCCCCUCCUCUCCCUUCUCUCUGUUUGCUCGGCUGGAAGAGAAGAAGAAGCAGAAGAAGGAAGGAGGAAGAAGAAAGAGAAAAGAAGAAGAAGAGACAAAGAACUGACAGUAGAGUCUAUUAUAUUUUGGAUGGCAACCUGUGGUAUUUCAAAGAUCAGAUAAUCAGGUUGCCUAUCUCGCAUUUAUUUGCGUUGGAGCAAGGCAAGUUAUUAUUCCUCUCCUUUGAGCAUAAUAAUCCUAUAUUCUAUAUUUCCAGUAUCUUGUGCAUUAGCCAUACAUGAUUCUAAAUGCAUAACCUGAAUAUAUAGCAAACCAGAUAUAUGCUAGAUUUUGCUUAGCCAUGCCUAGUUAGAUUACAUAAAAUAUAAUAAACUUAGAUUGGAAUAGUACGGUAGAAAUGGUUGAUUUCCGGGUGGCUAGUACUGUUCCAACCGACAUAAAAUUGCCAAGUACAUGUGAAGAACAUACGAGUACGACCGCAAUUCUCGUAUGGGCAUAGACCUAGCUGAUUAAGUUAUCUAGCAAAGGUGGUACCUCUAUACAAUGGUUCUAUUUUAAGUCCUCGAGCAGGAGGCAAAUUUACGCCGAGCAGGGCGAUUGUGAUAUUUACCGAGGCACAGGUAAAUAUAUGAGAUUUAUUGAUGUCGACUUGUUUGUGAACCCUGAUUGCGAUGACAUGGUGUCAUACAAUCAGUUCUCUCUAAAGACCUUGGGAACGCUAGAACUCCUCUCGCUGCUGAUAACGUUACGUUCAGAGCGUAUGGGGACUAGAGUUUAUGGAACAGGUACCACUGAUGUUAGUAACCGAAAAGCUUUGCCAUGACAAGGCUAAUGUGUUUGGCACGUCAUGGAUUGCGGGUAAAGCGUACAUUUACUGCAGUAAAGUAUAAAUGAAUCUAUUCGAAUAGCCGUGCUCACGGAUUUGAGUAUUGAGACUCAUAUGGUAUUUGGUUAGAAACUUUAUUCCAAACUUUAUUAAAUACUGUUGCAUUUAAAACAUUUUAGGCUUUCUUCCUCUAUAUUCUUUGCUUUCUGCAAGUAAACCUAGCUCUACUCAGAUAUUACCAUUUCAUGCAUUCAUUAUUGAAUAUAAUAGCUUGCUGAGUACGUUGUACUCACCCUUGCUUCAACCCUUUUUUUUUCCAGAGUCAAUUUAAUGUUCUUACCGAAGCCGGGAGUUCAAUCAUAUAAGUUAGUGUCAUUUCAAUCUAAUUCUCAAGUCUAGAUUAGAUAGAUGGUUUAAGUCUAUAGCAAAACAUUAGAGUUGGCUCAUUCUAUAGCUUCUACUGUAAUAGUUAGCCACAAAUUUGUAAAUACCCGUAUAUUUUGUAAUAACAUCUCCUCUGGAGCCUUGUUCAAAUGUAUGCAAUGAAGAUCUAGAUUGUUGAACCUGUAUCAAUCUACUGAUCCAGGGCUUGAUACAGUCUAAACAUGUCGGUUUCCGAAUCAUUAGUUUCGGGACCCGACAACGAGGGGGAGCGCCGCCUGGGGGGGAGCCUGCUGCGGGGUCGCCAUGGCCGCCAUGGGUGGAGGUGAGGAGGGAGACGAGUGGAUUCUCCAUGUCUCGAUCGCCCUCUCCUGGCGCCGCGACCUUCCGCAUGUCCCGCCCCAACGUCGACUACCUCUACACCAAGCUCACCGCCGCCAUCGCCAAGGAGGACGCCGCCCUCCGAGCUGCCAUCCCCGUCCGCCAGCACGUCGCCGUCUGUGUCCGAUGCCUCGCCAUGGGGGAGCCACUCAGUAACAGGACGCGGUGCUUCCCGGCAGGCCAUGGAGCUCAUGGAGGGUUAAGAUGAAAUUUACUGUGGGAGUUCGCUUGGAUAUAUAUUUUUUUAAAAAAAUCAUGAGCUGCAAUUA
Sequence
(XR_003241529.1):
CCACCACCUCUCGCCGCCUAUAAAUAUAAGGCGAGCCCUCCCCUUUUCUCCACACAUCAACAGAGCCUCGAGCUCCCUUUCUCUCUCUCCAUCCAUGGCCGAUCGUCGACGCCGUCGGUCGAUCUCCCCAUCCGUAGCUCCACCUCCCCUAUCCUCGCGCCACCGGCUUCGCCUCCAUCCGGCGAGUCCGUUUUUCCCCUUUCCCCUCUCCCUCCACCUCUAAGUCAAGCCACCACCGCCAUCAUCCAUGCCGGCUCGAGGUGAGCCCUUGCCGCCGCCGUUCCGGCUAUAUAUCUCUCCCUCUCGGCCAGCCACCGACCUCCCCGGGUGCGCGUCGCUCGGGAACACGCGUGGCCGCUGUCGUCGAGGCCGUUCAUCCACCGGAGCAUCGGCGCCCCUCCUCUCCCUUCUCUCUGUUUGCUCGGCUGGAAGAGAAGAAGAAGCAGAAGAAGGAAGGAGGAAGAAGAAAGAGAAAAGAAGAAGAAGAGACAAAGAACUGACAGAGUCUAUUAUAUUUUGGAUGGCAACCUGUGGUAUUUCAAAGAUCAGAUAAUCAGGUUGCCUAUCUCGCAUUUAUUUGCGUUGGAGCAAGGCAAGUUAUUAUUCCUCUCCUUUGAGCAUAAUAAUCCUAUAUUCUAUAUUUCCAGUAUCUUGUGCAUUAGCCAUACAUGAUUCUAAAUGCAUAACCUGAAUAUAUAGCAAACCAGAUAUAUGCUAGAUUUUGCUUAGCCAUGCCUAGUUAGAUUACAUAAAAUAUAAUAAACUUAGAUUGGAAUAGUACGGUAGAAAUGGUUGAUUUCCGGGUGGCUAGUACUGUUCCAACCGACAUAAAAUUGCCAAGUACAUGUGAAGAACAUACGAGUACGACCGCAAUUCUCGUAUGGGCAUAGACCUAGCUGAUUAAGUUAUCUAGCAAAGGUGGUACCUCUAUACAAUGGUUCUAUUUUAAGUCCUCGAGCAGGAGGCAAAUUUACGCCGAGCAGGGCGAUUGUGAUAUUUACCGAGGCACAGGUAAAUAUAUGAGAUUUAUUGAUGUCGACUUGUUUGUGAACCCUGAUUGCGAUGACAUGGUGUCAUACAAUCAGUUCUCUCUAAAGACCUUGGGAACGCUAGAACUCCUCUCGCUGCUGAUAACGUUACGUUCAGAGCGUAUGGGGACUAGAGUUUAUGGAACAGGUACCACUGAUGUUAGUAACCGAAAAGCUUUGCCAUGACAAGGCUAAUGUGUUUGGCACGUCAUGGAUUGCGGGUAAAGCGUACAUUUACUGCAGUAAAGUAUAAAUGAAUCUAUUCGAAUAGCCGUGCUCACGGAUUUGAGUAUUGAGACUCAUAUGGUAUUUGGUUAGAAACUUUAUUCCAAACUUUAUUAAAUACUGUUGCAUUUAAAACAUUUUAGGCUUUCUUCCUCUAUAUUCUUUGCUUUCUGCAAGUAAACCUAGCUCUACUCAGAUAUUACCAUUUCAUGCAUUCAUUAUUGAAUAUAAUAGCUUGCUGAGUACGUUGUACUCACCCUUGCUUCAACCCUUUUUUUUUCCAGAGUCAAUUUAAUGUUCUUACCGAAGCCGGGAGUUCAAUCAUAUAAGUUAGUGUCAUUUCAAUCUAAUUCUCAAGUCUAGAUUAGAUAGAUGGUUUAAGUCUAUAGCAAAACAUUAGAGUUGGCUCAUUCUAUAGCUUCUACUGUAAUAGUUAGCCACAAAUUUGUAAAUACCCGUAUAUUUUGUAAUAACAUCUCCUCUGGAGCCUUGUUCAAAUGUAUGCAAUGAAGAUCUAGAUUGUUGAACCUGUAUCAAUCUACUGAUCCAGGGCUUGAUACAGUCUAAACAUGUCGGUUUCCGAAUCAUUAGUUUCGGGACCCGACAACGAGGGGGAGCGCCGCCUGGGGGGGAGCCUGCUGCGGGGUCGCCAUGGCCGCCAUGGGUGGAGGUGAGGAGGGAGACGAGUGGAUUCUCCAUGUCUCGAUCGCCCUCUCCUGGCGCCGCGACCUUCCGCAUGUCCCGCCCCAACGUCGACUACCUCUACACCAAGCUCACCGCCGCCAUCGCCAAGGAGGACGCCGCCCUCCGAGCUGCCAUCCCCGUCCGCCAGCACGUCGCCGUCUGUGUCCGAUGCCUCGCCAUGGGGGAGCCACUCAGUAACAGGACGCGGUGCUUCCCGGCAGGCCAUGGAGCUCAUGGAGGGUUAAGAUGAAAUUUACUGUGGGAGUUCGCUUGGAUAUAUAUUUUUUUAAAAAAAUCAUGAGCUGCAAUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
28.05%
ME_num:
MEP:
42.68%
HE_num:
HEP:
29.07%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.83
Avg Expression:
18.03
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.5338032691241 | 9.23475934814857e-06 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -7.43683088908893 | 8.11861592375154e-12 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -4.62990908193914 | 1.52693931220016e-11 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -8.54410107161725 | 9.88798876059163e-12 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -4.15575078165035 | 2.65057257925022e-15 |
| 6 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | 2.69785911027203 | 2.06777493756452e-08 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 1.18780170698538 | 1.30351605158249e-07 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.94303984940527 | 6.75561897812277e-09 |
| 9 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 4.99648512391653 | 5.13570060230204e-29 |
| 10 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 3.16765637068 | 4.51921952931832e-09 |
| 11 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 4.36258830516273 | 2.93540244947693e-07 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 3.89770810885394 | 1.35078481618189e-45 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | 2.03583898955088 | 0.000247276175239922 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 3.75318566740501 | 5.96645647881546e-34 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 2.88498702601894 | 1.77325069348532e-54 |
| 16 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 4.06045446424237 | 6.71299145858253e-46 |
| 17 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | -1.85791253762587 | 0.0017307462786102 |
| 18 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 3.44475885950761 | 0.00010524976821855 |
| 19 | 9311 // leaf // control--/--9311 // leaf // salt | 1.48115911067812 | 1.26266125067318e-07 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -6.34201052584979 | 1.20154520825942e-15 |
| 21 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -3.07267401051426 | 6.10058096016484e-13 |
| 22 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 4.93376766842167 | 9.67924643488879e-06 |
| 23 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 3.9157099232995 | 1.39486045924245e-20 |
| 24 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 2.99266724088683 | 1.24692001585492e-12 |
| 25 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 3.61282996597051 | 3.55887784275207e-11 |
| 26 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 3.67063623346879 | 3.19307640840259e-06 |
| 27 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 6.13152714951809 | 1.16564540574169e-11 |
| 28 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 3.54150310742474 | 1.39583176745768e-20 |
| 29 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 6.13145161158263 | 1.1607819897272e-11 |
| 30 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 6.13131922321052 | 1.17388595030974e-11 |
| 31 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 2.12168793578488 | 7.77142592991876e-05 |
| 32 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 3.05780832044662 | 4.027707958011e-07 |
| 33 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.60656956259818 | 2.83372825428251e-12 |
| 34 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.56381506269889 | 2.24245440464357e-06 |
| 35 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 2.15931532277427 | 7.93138496779572e-07 |
| 36 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.34143461462096 | 5.09536851503218e-22 |