RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC9266303

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr1

Start:

16296163

End:

16300262

Strand:

-

Ref_name:

LOC9266303

Sequence
(XR_001545473.2):

UUUCUCGCUCUCUUCUCCGCCAGUCUGAGUCGCCAUUCUUCACUGUCCACCCCUAAGCCGAAGAAACCCAGGGAGAGAGCUCCAACUCUCCCUCUCCACCUCUCUUUCGUCGUCGGCCGCCGAAAAGGGGGACGCCGCCGAUCGCCAACGAGUCGUCUCCAUCCCUAUCUGAUUCACGUUCUAUUAUCUUCUCUCCAUGCCGAGCAAAUCCUCUUUUGACUCCAUCUUGUUUCGUCCACUGCAGCGACGGGAACGCGACCUCGUCUACGGGAGCUCUGGAGCGCGCUCCAAGCGCCGCCGCAGCCGACAUCGUCGCCGUUCCGAGCGCUGUAGACCGAGCCAAGCCGAGCCGUCACGCCAACGCCUUCUCCUUGAAGUCCUCCUCAAAACCCCUCAAUAAUCCCAGGCAAUGGCGCAGCAAGUGCGGAGAUCGGCCACCGUCUUCUUCACCUCCGGUUGCCGUCGCCAUUGUCGUUUCCGCCUCCUCCGCAGCUCGUCGUCCCGUUCGAGCCGUCGCCGUUCACCCGCAGAAGGACGCCGUCGCCGGGAGGAUGCGCGAGCCGUUGCUGUCACCAAGACCCCGGAAAAGUUCAACCUAACCCGCGAUGAUUGCUUAAUCGGUGAAGAAGUGAUUUAGGUGUUGACUUUUUCCAGUUACAAGGCAAG

Sequence
(XR_001545474.2):

UCUCGCUCUCUUCUCCGCCAGUCUGAGUCGCCAUUCUUCACUGUCCACCCCUAAGCCGAAGAAACCCAGGGAGAGAGCUCCAACUCUCCCUCUCCACCUCUCUUUCGUCGUCGGCCGCCGAAAAGGGGGACGCCGCCGAUCGCCAACGAGUCGUCUCCAUCCCUAUCUGAUUCACGUUCUAUUAUCUUCUCUCCAUGCCGAGCAAAUCCUCUUUUGACUCCAUCUUGUUUCGUCCACUGCAGCGACGGGAACGCGACCUCGUCUACGGGAGCUCUGGAGCGCGCUCCAAGCGCCGCCGCAGCCGACAUCGUCGCCGUUCCGAGCGCUGUAGACCGAGCCAAGCCGAGCCGUCACGCCAACGCCUUCUCCUUGAAGUCCUCCUCAAAACCCCUCAAUAAUCCCAGGCAAUGGCGCAGCAAGUGCGGAGAUCGGCCACCGUCUUCUUCACCUCCGGUUGCCGUCGCCAUUGUCGUUUCCGCCUCCUCCGCUCGUCGUCCCGUUCGAGCCGUCGCCGUUCACCCGCAGAAGGACGCCGUCGCCGGGAGGAUGCGCGAGCCGUUGCUGUCACCAAGACCCCGGAAAAGUUCAACCUAACCCGCGAUGAUUGCUUAAUCGGUGAAGAAGUGAUUUAGGUGUUGACUUUUUCCAGUUACAAGGCAAG

Sequence
(XR_003242467.1):

UCUCGCUCUCUUCUCCGCCAGUCUGAGUCGCCAUUCUUCACUGUCCACCCCUAAGCCGAAGAAACCCAGGGAGAGAGCUCCAACUCUCCCUCUCCACCUCUCUUUCGUCGUCGGCCGCCGAAAAGGGGGACGCCGCCGAUCGCCAACGAGUCGUCUCCAUCCCUAUCUGAUUCACGUUCUAUUAUCUUCUCUCCAUGCCGAGCAAAUCCUCUUUUGACUCCAUCUUGUUUCGUCCACUGCAGCGACGGGAACGCGACCUCGUCUACGGGAGCUCUGGAGCGCGCUCCAAGCGCCGCCGCAGCCGACAUCGUCGCCGUUCCGAGCGCUGUAGACCGAGCCAAGCCGAGCCGUCACGCCAACGCCUUCUCCUUGAAGUCCUCCUCAAAACCCCUCAAUAAUCCCAGGCAAUGGCGCAGCAAGUGCGGAGAUCGGCCACCGUCUUCUUCACCUCCGGUUGCCGUCGCCAUUGUCGUUUCCGCCUCCUCCGCUCGUCGUCCCGUUCGAGCCGUCGCCGUUCACCCGCAGAAGGACGCCGUCGCCGGGAGGAUGCGCGAGCCGUUGCUGUCACCAAGACCCCGGAAAAGUUCAACCUAACCCGCGGUUUUAGAUUUAGUCUUUGAGUGAUGCGGGUAAUCGACUGUUUCUUCUAGGACUUGAACUUAAUGGGGUAAACCCCUAGUCGGUGUGCUUGUGGAUUGGGUAGACAAGCUUCCGUUGUUCUCUCAUGUGUCUAUUUGGCCGGUCGGCCUAUGUAAUUAUUAAGUUGUUGUAAGUCUUAAGUUUCUUUCA

Sequence
(XR_003242465.1):

UUCUCGCUCUCUUCUCCGCCAGUCUGAGUCGCCAUUCUUCACUGUCCACCCCUAAGCCGAAGAAACCCAGGGAGAGAGCUCCAACUCUCCCUCUCCACCUCUCUUUCGUCGUCGGCCGCCGAAAAGGGGGACGCCGCCGAUCGCCAACGAGUCGUCUCCAUCCCUAUCUGAUUCACGUUCUAUUAUCUUCUCUCCAUGCCGAGCAAAUCCUCUUUUGACUCCAUCUUGUUUCGUCCACUGCAGCGACGGGAACGCGACCUCGUCUACGGGAGCUCUGGAGCGCGCUCCAAGCGCCGCCGCAGCCGACAUCGUCGCCGUUCCGAGCGCUGUAGACCGAGCCAAGCCGAGCCGUCACGCCAACGCCUUCUCCUUGAAGUCCUCCUCAAAACCCCUCAAUAAUCCCAGGCAAUGGCGCAGCAAGUGCGGAGAUCGGCCACCGUCUUCUUCACCUCCGGUUGCCGUCGCCAUUGUCGUUUCCGCCUCCUCCGCAGCUCGUCGUCCCGUUCGAGCCGUCGCCGUUCACCCGCAGAAGGACGCCGUCGCCGGGAGGAUGCGCGAGCCGUUGCUGUCACCAAGACCCCGGAAAAGUUCAACCUAACCCGCGGUUUUAGAUUUAGUCUUUGAGUGAUGCGGGUAAUCGACUGUUUCUUCUAGGACUUGAACUUAAUGGGGUAAACCCCUAGUCGGUGUGCUUGUGGAUUGGGUAGACAAGCUUCCGUUGUUCUCUCAUGUGUCUAUUUGGCCGGUCGGCCUAUGUAAUUAUUAAGUUGUUGUAAGUCUUAAGUUUCUUUCA

Sequence
(XR_003242466.1):

CUCUUCUCCGCCAGUCUGAGUCGCCAUUCUUCACUGUCCACCCCUAAGCCGAAGAAACCCAGGGAGAGAGCUCCAACUCUCCCUCUCCACCUCUCUUUCGUCGUCGGCCGCCGAAAAGGGGGACGCCGCCGAUCGCCAACGACGACGGGAACGCGACCUCGUCUACGGGAGCUCUGGAGCGCGCUCCAAGCGCCGCCGCAGCCGACAUCGUCGCCGUUCCGAGCGCUGUAGACCGAGCCAAGCCGAGCCGUCACGCCAACGCCUUCUCCUUGAAGUCCUCCUCAAAACCCCUCAAUAAUCCCAGGCAAUGGCGCAGCAAGUGCGGAGAUCGGCCACCGUCUUCUUCACCUCCGGUUGCCGUCGCCAUUGUCGUUUCCGCCUCCUCCGCAGCUCGUCGUCCCGUUCGAGCCGUCGCCGUUCACCCGCAGAAGGACGCCGUCGCCGGGAGGAUGCGCGAGCCGUUGCUGUCACCAAGACCCCGGAAAAGUUCAACCUAACCCGCGAUGAUUGCUUAAUCGGUGAAGAAGUGAUUUAGGUGUUGACUUUUUCCAGUUACAAGGCAAG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

182

LEP:

36.99%

ME_num:

212

MEP:

43.09%

HE_num:

97

HEP:

19.72%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

carpel

Tau :

0.93

Avg Expression:

109.67

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN-4.472314244868651.1895520285141e-48
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN-4.695359641046765.35384683514449e-53
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN-5.234981843376948.06320562968504e-55
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA-7.951907873722671.45376042686418e-13
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN-5.599717507104934.97493544216672e-33
6Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA-10.20240805829795.80904469240492e-17
7Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA-3.784212262704361.20988835999636e-56
8IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h-1.782414593306770.00392142580539933
9IR64 // panicle // Dawn--/--IR64 // panicle // Dusk-1.708783727886150.00897147656746595
10Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days"1.689673552791590.0458080101271719
119311 // leaf // control--/--9311 // leaf // salt2.589869481353170.00479273185259808
12Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-7.237510744112581.89172617922762e-31
13Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN-4.736389840706111.7651967716959e-65
14Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day4.502474274682466.11328804198334e-06
15Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA-4.804815152367552.68240791283204e-44
169L136 // leaf // control--/--9L136 // leaf // salt2.608545020151583.65840592112719e-10
17Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day5.756690656857595.91240079995171e-05
18Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-5.786642003720254.51400084014149e-65