Chr:
Chr6
Start:
16100024
End:
16102063
Strand:
-
Ref_name:
LOC9266257
Sequence
(XR_001546389.2):
GAUCUGUUAUCUGCUCGUCUCCACAUCGUAAUAUGGCGGCACCCACCAUACUACAGCUCCCCCGGCGGCACCGGGAGAUGAGAGGAAAGCGGAGGAGGCGCUCAGCUGCAUCACCUGCAACCUGCGCUCAGCGACGAGAUUAAUUUCCUCCGUGGGGCAGAGAGGACGGUAGCGGAGGCGGUGCUCGCUCCCUCCCGGUUCCCCCACGACCUGAGCGACUGAUGCGACCUCCUUCCCACUCGUUCAGAUCCCUCCCCUGCAACUUGGUUUGGACGGAUUGCAUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCCCCUAUUCCUCUUUUCCCCAAAUUUCUCUCUAUUUUCUACCUUCCUGAGAUUCAUACCGGAGCAUCCUGUCAGCGGCACCCACGACCUUGCCCAGCCGCCGCUGCAUCAAACACUUCCGGCUCCAGCGCAGCCGCGCCUCCAACGUGUGUGCUGACUUCCUCGGAGACAAGAGCUUUACUCUUUACUCUUUAUUAUUAUUAUUAUUAUUAUUAUUAUUAUUAUUAUUAUUAUUAUUAUUAUUAUUAUUAUUAUUAUUAUUAUUAUUGUUCGUUCCUUUACAGAUUUUGCAAGUUUUCCCUUUCAUCGCACAAUCAGUUGAUCUCAGUCAGUAACAUGCUUGUUGGUUGUCCACACAGUUUGUCAAUAUAAGCCUUCUUAAAUUUUUUGAAAGUUCACUGGUCAGAGGCUUUUCACUGACUAAUUAGGUUAGGAACAGCAAGGUACAGAAAUUACUAAAUGGAGUUAGAUUCAGCCAGUGCCCACUGCCUAGUGUUUAUUGAUCAAUUAAUCUACCACCUCCUCUUUGUGACCUCUUGUUUGCUAUUCACAUUCACCCAUAUGGUCACUUACUCACAAAUCUGCCAGCAGCUGAUCUCCCAAAAUAACUGGUGCAUACUAUACUAGCUAGUUAAAGAAGAAUACUUUUGUUGGCAUUGACCACUCUGAUGAUCUCAUUAGUACAUUCCUUGUUGAGGAUCUCGAUUCAUAUAUGAUUCUUGUUGAUAACUUCUAUCAACUUUUUGCUGACAUCAUAGUAAUUUUUAAAAUUUUCAGGUUCAGCAGAGUACUUACUUGCUAGGCUAACAUUUUGCUGAAUUUUCAGGCUCACUAGAGCAGCACAAACGAUUUUCUUUUUAUCGGUACUGGAUCAGAUAGCUGUCACUUUGAUUUUCAUACAUAAGUACAUACUUUUGUGAUCUUUUUCCCAUGUACAAUUCAACAUAUCUAGUUAGAACUUAAUUACAAGGACGUGUCUUACACAUAUGUAUGUCAUCAUUAAUUAAAACCUGUAUGUUCUGUCUCUGAUGAUAUGCACUGGAGACAUAUACCGAUCACAUAGGACAUUGAUUUUGAUUUUUACUUACAUGCCUUAUGAUAUUUCAUUUUGGUAGAUACCAUGUGGGAUAAUAUCAAUUUGGAAACGACAUUUUUUUUCCGAGAUAUCAUUCUACAAAUAUCAUUUGUGUUGUGGCUGGGAGAUUCACCUCCUUCAAUAUAUAACUAAAUUCCAUAUAGGCAUAGGAUGGUGAAAGCCACAGCUUCCCCUCAAUCCCUUAUAAUGGUUGAUCCUACUGCACACAGUUCUUCAGGCUGCUGUCAUCAAGUAAUGCUGGGUUGUGUAAUAGAACAGUGGAAAAUGUAUCUAGUAUAUGAUCCAAAUGUACUAUGAGGAAAAUGUUUGUUGUAUAUAUAAGUAUAUACAUGUAUUUUGCGUCCAAGAUGUGUAUCGGAGCUUAGACGGUUGUCAGCCAUUUUUCUAGUCUAGGGAUGAUAUGUGUAAUUUUUGUGGCAAUCCCUACGUGUGGGUAGAGAUUGAACUGGAGAGAUAUUUUCAAAGUUUGCAUUGAUUCCACGGGGGUGCUGAUUACAUGAGAAUAGAGAUGAUCAAAUAUAUCUUUCUCAUUUCAUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
1.42%
ME_num:
MEP:
28.46%
HE_num:
HEP:
69.92%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.66
Avg Expression:
26.29
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.06407657933157 | 0.0235539327412412 |
| 2 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.11690449927889 | 1.52104586981411e-06 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.24814837680062 | 1.29661108664573e-07 |
| 4 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -1.36013393537199 | 4.51898560443451e-08 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.19613734125044 | 1.79500364395317e-11 |
| 6 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -1.05429430477478 | 1.46054873000925e-05 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.24585207448491 | 9.41765181803582e-06 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.15343804246444 | 1.88108261582431e-12 |
| 9 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.90237074119931 | 5.23358260865016e-16 |
| 10 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.90245920342023 | 6.52777547999022e-16 |
| 11 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.90255536526862 | 5.40988400347505e-16 |