Chr:
Chr8
Start:
11629247
End:
11631539
Strand:
+
Ref_name:
LOC9266139
Sequence
(XR_001548107.2):
UAGCCACCCCUUUUAAUAUUGCCGAAAUCUGGUUUCGACACUAGGGCGGCCAGAUCGCGCGGCGGCGGUCCUCGGGCGGCUUGCGACGGCGUGCGGCUGCGUCGACGGCCAGCGGCGGCAGUCCUCGGGCGGCUCGGCGACACCGUGCGGCAGCGUCGACGGCCUGCAGCGGCGGUCUUCUCCGUCGCCGCUCACCGCGCCGGCUUGCUCGCCCCUCGCCGCUUGCCGCGCCGACCUCCGUUUCCAUCACUGCCGGGUGUGGGAGCGGUGGAUCUGCCGGCGCCGUGGCUGCCACCAGCAGACCAAACAACCCUACUGCUAACGGAAUCUCCAUCUCUAUGUGUUACUAUGUUAUGCGUGUAUCGUCUUAAUUAGCUAAGUAGCUGCGGUGCGACCGUGAGUCUGACUGAACUGAUCUUUGGUCUGUGGUUACUGGCGGUGCCUAAAGGUUUCUUUUCUUGAUUAUACUUGGGCUGUGUAGAUAUUUCGAGUUUCGCUUCUGUAGGGCUGUUUCUGAUGCAAUUUGCAAUAGAUUGCGUCAUCUCUGUUCAUUAGCAGUAGUUUUGCUGGAACUUUACUGGAUUGUUGCUUAGGCUAGUUCAGGGGUGCCAAUGGGGAUGGAAUUGCCUUAUCAGGUCUUCUCAGCUUAUAUACUUAUCCUAUAGUUGUUCUGGGUGUAGUGGUUGUGCUGGUUUCUUUAAUGGAAAUGGGAGGGGAUCUGCCCUUCUUGCUAAAAAAAAAGUAGAUUGCAAAAUGAUUAAUUGAGUUUUCUCUGUUUACUUUUUUUUUAUUAUUUUUUUGCGCCGGGCUGAGUUUUCUGUGUGUUGGCAUCUUGCAACUGUCGAGAAAGGUCUAUUUAACUGAAGUUUGGCGCUGGUUAAUAUCCUAGUAUGUUUCUUUGUCCCUGUAGACCUGAUUACUAACCUGGAAUCAAUAUCCUCAAUUGCAUUAGAGUGAUUACUUUUGUUGGGGUACACAAAUCAUUGCUAGCUAAAUAUCUGGAGGGUAAUGCUGAACUAUGGUUAUUUAUUUUCAACAUAGUAUUCUGUUAAACUGAAUAUAUAAAUUUUAUCUUUGACAAGCACUAAUUCCUGUUCUUUACUGUUGGACUAAUUGUGCCUCACAUGUGUAUAGAAGUUACAAAUGGCCCCUUCCUCUUCUGGUACUAGUUAGUAGGAAAAGCUGCAUUCACAAACAAUUGGUUGAGCUGAUAUGGCUACAUCUGUUUGGCAGUUUCACUUGAUUUCUUCAGUGAUAUAAGCAUUCCUGGGCACUUGAUGCAGUAUGGCACAGCUAGGGCGCUAGAUGGUAGGUGGAUGCUGAAGACUGAAGAUGGUGAUGAGCUCUAUCUUGAUUUAGAUGAAGAGGUAAUGAUGACAUUGAACAAGGCGUCCUUGAUAAGGUUUGUCUGCCCUUUUCAUGUCGACUUGCUGAUUCAUGAUGAGAGGGCAAUAUCUUUUGAUUGGUGUGAUUCAGACAUGCGACUUGUUUUGUUAGUGAAUGUGACUGUAACUUGUUUAUUUUGCUAGGAUAGUUACAUGUACUUAGUAACUCAGUGAACCUGUGAUUGUAUUUGGAACAUGACUGGAUUUGGCUGUUAACUAGGUUGUAAAUUUUGUGUUGUAUUGGAUGUUUGAUGCUAAUUGGGUUGUUACCUUUGUGCUAUAUGGGUUGUUAUUGUGUUUGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
38.01%
ME_num:
MEP:
42.89%
HE_num:
HEP:
18.9%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.79
Avg Expression:
11.76
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.00831470221201 | 0.00841651941514401 |
| 2 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -1.73852404488168 | 0.0316386350329237 |
| 3 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.22300228199929 | 0.0167530069273417 |