Chr:
Chr10
Start:
17028129
End:
17032295
Strand:
-
Ref_name:
LOC9266069
Sequence
(XR_001540785.2):
ACGCUGCCUUUCCCCUUCUCUUGCAAAGCUAGGUUAGGGUUUUCUUCUCUUCUCCCUUUCCCGUCGUCGCCGCCAUCUCUCUUCUCGCCGUGCGGCUUUCUCUCUCGUGAGCACAGCACGGCGCGGUCUCCGCGCUUCCCUCCUCCCCUCCCUUUCUUCGGCUUGGCCCUGGUGGGUGUGUGAGCGCUCAGCUCCGUAUCGGUGACUCGUCGUCCUCCUCGUAUCCUGCUUGACCUGAUUGCACGUGCACCCAUUAGAGUUGGAGAAGACCAACCUCCUCCUUCCUGGGACCUUGUACCCUCUCCAAGAGAUUGCUCGUGAACCAACUAUAGUUGGAGAAGAAAUUUUCUGGGGAGCGAAAUAAAGGAAAUGCAAUGUGUUGCUGACUUUGUGGGGAAUGGGAGGAAGUCCUGAUAUUUUUUUUAUAUGUAGGGUAAUACUUAUGAUCUUUUCAAGACAUUCUUGAAAGCAAGCAUGGGUGGCUUUCUGGUAUGGACAUGCAGGAAGAGCACUUCUAUUCAGGGUGAAGACAUCCAUUGGAGCAAGCAUUGGUGUUGGAUGUAAUUGUUGCCAUUGUGACAUGUCAGGUCUUCAACAAUGCCUCAAUGCUGUUCUGAUUGUACUCUUUUGAUCAAGCCGAUGUGCCUAUUUGUGUUUUCUAUUUUCCUUUGAAAUGGACAUAUGCUGCUUUUGAUUAUACCAUCACCAGUGCAGUACUGUUUUCAGGUGAAA
Sequence
(XR_001540786.2):
UGCCUGGGCGGGAGGCGCGGCACGAAGUGCCGAUCGGGCCGUACCGGCCCGAUGGCUGGUGGGCUAUGCCUGGCCGUGCCGGGUAGGCCUUUUGGCCAUCUAUACUGGGGCGUGGAAAAUUUCCUCGAGAGGAGUCGCGGCGCAACGAAGAUGCCACGGAGGGGGCGGCGCGCGGCACGACCCGGAGGCGAUGGCACGGCUCUCUCCUCCGGCCGCCACCUUCUCUCCGAUUGCACGUGCACCCAUUAGAGUUGGAGAAGACCAACCUCCUCCUUCCUGGGACCUUGUACCCUCUCCAAGAGAUUGCUCGUGAACCAACUAUAGUUGGAGAAGAAAUUUUCUGGGGAGCGAAAUAAAGGAAAUGCAAUGUGUUGCUGACUUUGUGGGGAAUGGGAGGAAGUCCUGAUAUUUUUUUUAUAUGUAGGGUAAUACUUAUGAUCUUUUCAAGACAUUCUUGAAAGCAAGCAUGGGUGGCUUUCUGGUAUGGACAUGCAGGAAGAGCACUUCUAUUCAGGGUGAAGACAUCCAUUGGAGCAAGCAUUGGUGUUGGAUGUAAUUGUUGCCAUUGUGACAUGUCAGGUCUUCAACAAUGCCUCAAUGCUGUUCUGAUUGUACUCUUUUGAUCAAGCCGAUGUGCCUAUUUGUGUUUUCUAUUUUCCUUUGAAAUGGACAUAUGCUGCUUUUGAUUAUACCAUCACCAGUGCAGUACUGUUUUCAGGUGAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
4.67%
ME_num:
MEP:
5.89%
HE_num:
HEP:
89.23%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seedling
Tau :
0.58
Avg Expression:
56.47
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -8.36368034059152 | 8.8568924234864e-22 |
| 2 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.58585436543968 | 0.0264505682890172 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.48706689906592 | 7.08958190015023e-11 |
| 4 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -5.02428268223114 | 2.21710989664306e-08 |
| 5 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.34382553781135 | 0.00668712065877069 |
| 6 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 2.03429499086391 | 1.34865479444427e-05 |