Chr:
Chr12
Start:
14960755
End:
14965068
Strand:
-
Ref_name:
LOC4352150
Sequence
(XR_001542340.2):
AAGACCGAGCGAAGAUUACGCCUCAUCAGUCAUCACCCUCUCAACGCGCGACUCACUCGCGUCGUCGUCCCCUUCCGCCGCCGGCGCGCACUGAACGAGAGGCGAGGUCUUCCCCACCGCUGGAGCUUCCCCAUCCACCGCGGCCGGCCGCAGGCGGAGACGACGUCGUCCCCAUCCGUCGCCCGGAGCCGACGUCGUCCCCAACCGCCGCCGCCGGAGACAAGGUCUUCCCGAUGCGCCGCCGCCGCCGCAGUCCACCGCUGCCCAUGAGGUCGUUCCUUUCCGCCGCCGCCGCCGCCGUCACCGCGCACUGAACCGGAGGCGAGGUCUUCCCCAGCCCCUGUCUUCAUCGUGCGCAUCCUUGCCGUGCGCCAUGUUUAGUUGUCUUCACCCUCGACGCCUCGGAGCCGGACUCCCGCUGCCCACCACCACACCACCGGACAACCUUUAUCCCUGCCGCCCUCCUCUCCAUCGUGUGCUUGCCUUCUUUGUUAUCUACACGCCCGAGGAGAGAGGAUUCCUACCACGUCUUUCUGUUGUGCCAGUAUCCUCAUCGAUGAAUGAUUUUACCACAGCAGCAAAGCGGUUGCCAUCUGCUGGUAUUAUCCCAGGUUUGCUUUUCCGUCUCCUCUCCUUCUCAAUUCCUUUAUGUGCCCUUGUUCAGAUUGCAUUUACUUUCUCUUUCUCCUUUCUGCUAUCAAAUAGGAUCAAUGAAUUGUUCCGUGAAUGCUAAUUAUAUUAUGAGAAUUUUUCCCCGCCAAAAAAUAAACGAAUGAAAUCUGUAGAAAUAUGCUAUAUAUUAAUCUUGAAUUUGUGAGAAUGUCAACAUUCAACCUUUCGACUAUGACCCUAUGUCACACUGAUUCAUUGUCAUAUCUGUUGAUUUCCAAAUUUGCUUAAUCGAUACAUGUUAAAAUGCAAUUCCAAUAUAUAUGAAAAAUAACAAAAUUGAUAAAAUGUUUGAUUAUGCUCUGGAAAUUAUACAAAAUGAAAAGCUCAAUCUAUAUGUAAAUCAUUGAUUCUGGGUACUUAUUCAACUACAAAAGGCAUUGCCCCAGAUCCCAACUUUCAUAACUUUAUUAGUUUGUCAUUUUUGUUUUUGAUCCUUGCACAUGAUGACAGUACCUCUGAGGUAUUGUUUCACUUUCACCCUAAAUUUACAUGAAAAAUCCUAAAUGCAAUUUGUUUUACCUAUGUAAAUGAUGCAAGAUGCAAGUGUAGGAGCUGAAAAUUUCUCUUUCAGGGACCAAGAAGAAUACAAACUUAACAGUUAGUUAUAAUCAUAAGAUUAUAUAUUGUGUUUCAUUUUAUUAUCAUUAAACUGAUCCACAUGAUGUUCAAGUGAUUACAGAAAUGCAUAGAUUUUUUUAAAAGUUGGGUUUGAUAGAUGUGUAGAAUUCCAUGCCGCCAUCAGUGAUGCCUCGCAAGCAAGCCACAAUGUCUGCACCUAGGCCUUCAGCGGCUCCAGCUACUGCGUGCUGCAGAUGGUACCCUUCCAUUACAGUGAGGGGGUCUUCCAGAUUAGCUAUCACGGUGGUUCCUUGGUGUGCCCAUGGGCAUCUCACCAACUGUUUGAUGAAAUGCAUGGUCGAGGUGCACUCCUGUUACUGUUUGAAUCCUUAUUAUUAUCUCAUAUUUACUCUAUUUUGCACUGUAUGUUGUGAUUGAAAGCUCUGCCUAUGUAAACUAAAACUGAAUUGUUCCUUGGUCUCCAAUACUUCAUAUGUUGCAGGCAAAUAUUUCAUUUCUGCAGGGUAGAACACCAUAUUAUUUUAGUGUAUAGAUUUUACUAUGAGAUCCUUGACUUUUUAAUGACUAUUGGAGUCAUGUCAGUAUGUUAAUAGUGAUAUAGAUAUGUUAACCUGUCCAAUUUUACCUUAUAUUCCCAACACAAUAGCUUUGUUUCUUGACUGAGAUUUAUUUGUCUCAUGUUUCUACUGCAUUCAAAAGUUUGCAGAUCAAUUCAUAUUUCAUAAUCAAUCAGCAAACCUGGACAUUGUUUCAAGGGACAUGUGGACUUGGCUACAGUAUAUCUAUUUGCUUGAUCUUUAGUUGCAUGUAGACUCCUUUUGAGAUUUAUUUAUUUUAACCCACAAAAAAGGAGAUUAUUUAUUUUAAGAUAUGUCCCUUUAUUGUUCAACUGCAACUAAUUUGGAAGUUCAUAGAUAAUGAGAUGUAACAGAUGGGCCAUUAAAAACUCUCUGAGUCCGUUCUAUGAAAUGUAAAGUAAGAUGCCAUGCCCUUCCCAGUAUUACCUUAUUACUGUUAUCUGCCUUCUUUUAUUGAUAAAAAAAAGUCAUGUGAAUCUUGGAGUGGAAUAUUAAAAAACCACUGCAUACAACAUUGCAUUAUCUGGAUGAGUUAUCAUCAAGCAUCAUACUGCUAUUUCUAAUCAGUGUUGCACAUGUAUUUCAUCAAGCUCCUUUGUUACUUUCUGGCUACAUGAAGUGGAGUUACUAAUAUAUUGCUCUAUGAAGUGAAAGUUUCUUCUUGCUCAAAAAACUACUCCUAUAAUAAAAUGGCUAAAUAUGCCAAUUUUCUACCACUACUGAAUCUGAAGUUCAACUGAUGUGCUUCAUUCCCAUGUUAGCCUUGAUAUGGUCAGCCACCAGUAUUAAUAUUAACAAAUUUCCUGUCAUAUUUGAGAGAACUGAAACCGCUUCUUUGAAAUGGGAUCUAAUUGUUGAAAUAUGUUUUUUUUUUCAUGUUUGUGCAUGAUUGGAGUAUCUCUUUUUUUUCGGCUGUACUGAAAUUUGGUUUGUGAUUAACCUGUGAAAGUAUCUGUUUGCACUGCUCGAUAUCCUUUAUUUUGAAAGCGACAUCCCGAGGAGGAAGGCUCUUGUGCUAAAGAAAAUCUUUAGUUCCUCUCCUUCCAAAUUUUUUGGUUCUUCUUUUUGUUUUGAUUAAUGAAAGCAGAAAUUCUUGAACUGAAGGAAAAACAGGUAGCUCUACUGUGUUUAUGGUCUUUCCUGUCGAAGUAGGAAUUCAUAGGUGUGUGGCAAUGCUCAGCGAUUGCACAAGUGAAGGGGAUGCAAUUAGACUUGGAAAUGGAGUUAGAAGGCUUAAAGAAUGGACGAAGGCAUAUAUCCUCUUCAAAGAAUGAGGUCUCAAGGGAUUUGGUUGUCAAUGUAAAAUCACAGAUGAAACAAUCUUUGUUGGUGGCUGCCCGGGGUUGCCAAGCGGUGUCUCCACCUCUGACUCCAUUCAUGUAAUCAUGUUCAUGGUCUGCUCCAUUGAGUUUAUUUUUACUGGAUGCACAUCCUUCCAUUAGUAGUUCUUGCAAGAAACUGAAAUAAGUAACAGUCGUAUAGCAUUAUGCUGCCAGUAUCUUCAGUAAAGAAUGUAUUGUCAUUUGCUUACCUCUUUUGUGUUUUCUUCUUCUGAUGCUUAGAGACACAAAAACAAGCGUGUACAAACGAUGGAAAGAGAAUAAACUGUAAUUAGUGAUCAAGAUUGCACCGCUCAUCUUUUGCCACAAACACUGCAAGAGAGAUUGAUUUACAUAUAGUGAAUGAAUCAAUUCUACA
Sequence
(XR_001542341.2):
CGCGUGAAGACCGAGCGAAGAUUACGCCUCAUCAGUCAUCACCCUCUCAACGCGCGACUCACUCGCGUCGUCGUCCCCUUCCGCCGCCGGCGCGCACUGAACGAGAGGCGAGGUCUUCCCCACCGCUGGAGCUUCCCCAUCCACCGCGGCCGGCCGCAGGCGGAGACGACGUCGUCCCCAUCCGUCGCCCGGAGCCGACGUCGUCCCCAACCGCCGCCGCCGGAGACAAGGUCUUCCCGAUGCGCCGCCGCCGCCGCAGUCCACCGCUGCCCAUGAGGUCGUUCCUUUCCGCCGCCGCCGCCGCCGUCACCGCGCACUGAACCGGAGGCGAGGUCUUCCCCAGCCCCUGUCUUCAUCGUGCGCAUCCUUGCCGUGCGCCAUGUUUAGUUGUCUUCACCCUCGACGCCUCGGAGCCGGACUCCCGCUGCCCACCACCACACCACCGGACAACCUUUAUCCCUGCCGCCCUCCUCUCCAUCGUGUGCUUGCCUUCUUUGUUAUCUACACGCCCGAGGAGAGAGGAUUCCUACCACGUCUUUCUGUUGUGCCAGUAUCCUCAUCGAUGAAUGAUUUUACCACAGCAGCAAAGCGGUUGCCAUCUGCUGGUAUUAUCCCAGAUGUGUAGAAUUCCAUGCCGCCAUCAGUGAUGCCUCGCAAGCAAGCCACAAUGUCUGCACCUAGGCCUUCAGCGGCUCCAGCUACUGCGUGCUGCAGAUGGUACCCUUCCAUUACAGUGAGGGGGUCUUCCAGAUUAGCUAUCACGGUGGUUCCUUGGUGUGCCCAUGGGCAUCUCACCAACUGUUUGAUGAAAUGCAUGGUCGAGGUGCACUCCUGUUACUGUUUGAAUCCUUAUUAUUAUCUCAUAUUUACUCUAUUUUGCACUGUAUGUUGUGAUUGAAAGCUCUGCCUAUGUAAACUAAAACUGAAUUGUUCCUUGGUCUCCAAUACUUCAUAUGUUGCAGGCAAAUAUUUCAUUUCUGCAGGGUAGAACACCAUAUUAUUUUAGUGUAUAGAUUUUACUAUGAGAUCCUUGACUUUUUAAUGACUAUUGGAGUCAUGUCAGUAUGUUAAUAGUGAUAUAGAUAUGUUAACCUGUCCAAUUUUACCUUAUAUUCCCAACACAAUAGCUUUGUUUCUUGACUGAGAUUUAUUUGUCUCAUGUUUCUACUGCAUUCAAAAGUUUGCAGAUCAAUUCAUAUUUCAUAAUCAAUCAGCAAACCUGGACAUUGUUUCAAGGGACAUGUGGACUUGGCUACAGUAUAUCUAUUUGCUUGAUCUUUAGUUGCAUGUAGACUCCUUUUGAGAUUUAUUUAUUUUAACCCACAAAAAAGGAGAUUAUUUAUUUUAAGAUAUGUCCCUUUAUUGUUCAACUGCAACUAAUUUGGAAGUUCAUAGAUAAUGAGAUGUAACAGAUGGGCCAUUAAAAACUCUCUGAGUCCGUUCUAUGAAAUGUAAAGUAAGAUGCCAUGCCCUUCCCAGUAUUACCUUAUUACUGUUAUCUGCCUUCUUUUAUUGAUAAAAAAAAGUCAUGUGAAUCUUGGAGUGGAAUAUUAAAAAACCACUGCAUACAACAUUGCAUUAUCUGGAUGAGUUAUCAUCAAGCAUCAUACUGCUAUUUCUAAUCAGUGUUGCACAUGUAUUUCAUCAAGCUCCUUUGUUACUUUCUGGCUACAUGAAGUGGAGUUACUAAUAUAUUGCUCUAUGAAGUGAAAGUUUCUUCUUGCUCAAAAAACUACUCCUAUAAUAAAAUGGCUAAAUAUGCCAAUUUUCUACCACUACUGAAUCUGAAGUUCAACUGAUGUGCUUCAUUCCCAUGUUAGCCUUGAUAUGGUCAGCCACCAGUAUUAAUAUUAACAAAUUUCCUGUCAUAUUUGAGAGAACUGAAACCGCUUCUUUGAAAUGGGAUCUAAUUGUUGAAAUAUGUUUUUUUUUUCAUGUUUGUGCAUGAUUGGAGUAUCUCUUUUUUUUCGGCUGUACUGAAAUUUGGUUUGUGAUUAACCUGUGAAAGUAUCUGUUUGCACUGCUCGAUAUCCUUUAUUUUGAAAGCGACAUCCCGAGGAGGAAGGCUCUUGUGCUAAAGAAAAUCUUUAGUUCCUCUCCUUCCAAAUUUUUUGGUUCUUCUUUUUGUUUUGAUUAAUGAAAGCAGAAAUUCUUGAACUGAAGGAAAAACAGGUAGCUCUACUGUGUUUAUGGUCUUUCCUGUCGAAGUAGGAAUUCAUAGGUGUGUGGCAAUGCUCAGCGAUUGCACAAGUGAAGGGGAUGCAAUUAGACUUGGAAAUGGAGUUAGAAGGCUUAAAGAAUGGACGAAGGCAUAUAUCCUCUUCAAAGAAUGAGGUCUCAAGGGAUUUGGUUGUCAAUGUAAAAUCACAGAUGAAACAAUCUUUGUUGGUGGCUGCCCGGGGUUGCCAAGCGGUGUCUCCACCUCUGACUCCAUUCAUGUAAUCAUGUUCAUGGUCUGCUCCAUUGAGUUUAUUUUUACUGGAUGCACAUCCUUCCAUUAGUAGUUCUUGCAAGAAACUGAAAUAAGUAACAGUCGUAUAGCAUUAUGCUGCCAGUAUCUUCAGUAAAGAAUGUAUUGUCAUUUGCUUACCUCUUUUGUGUUUUCUUCUUCUGAUGCUUAGAGACACAAAAACAAGCGUGUACAAACGAUGGAAAGAGAAUAAACUGUAAUUAGUGAUCAAGAUUGCACCGCUCAUCUUUUGCCACAAACACUGCAAGAGAGAUUGAUUUACAUAUAGUGAAUGAAUCAAUUCUACA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.61%
ME_num:
MEP:
41.06%
HE_num:
HEP:
58.13%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.82
Avg Expression:
29.52
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.59627706335879 | 0.0357440275392218 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.32776985659217 | 0.0470764502703203 |
| 3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -1.03861662985527 | 0.000201825543369024 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.38342529059644 | 5.44866946893588e-07 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.27141736163786 | 1.87689421094865e-06 |
| 6 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 2.22053389141835 | 0.0105335437712959 |
| 7 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 1.02177260094976 | 0.000418014600796844 |
| 8 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -1.23379506648703 | 8.84878517973881e-06 |
| 9 | 9311 // leaf // control--/--9311 // leaf // salt | -1.10367479714106 | 3.64614545845243e-07 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.34010715968762 | 0.000104073791537701 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.27834671213 | 3.50315321331344e-07 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -1.11204812097394 | 0.000262047477189632 |
| 13 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.36392852543023 | 0.000270474918180078 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.15145634180704 | 5.4854585006982e-05 |
| 15 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.36400811333047 | 0.000274900719987845 |
| 16 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.36414486815556 | 0.000271857618102884 |
| 17 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.01464756393491 | 3.51076029234132e-06 |