Chr:
Chr12
Start:
10454413
End:
10458572
Strand:
-
Ref_name:
LOC4351979
Sequence
(XR_001541740.2):
CCAAGAAUUGCAAACUCUAGAAUCGGAAUCGCCUCGCAUCCGGCACUUGCUAUGGCCGCCGCCGCCGGGACUCCGCCGCCGCCGCCGCCGCACGCCCCGUCGGGCCCACUCGUCAUACUCCGGUGACGCCGCGCGAUGAUCCCCGGCGACCACUCCUCCGGACCCGCGGAAUUAUCCCCCGAUUGCUUUGACCCUGAAGCUCCAGGUGGAUCCGUGGCCAUUGUAUCUGACGGUUGAAGAUAUAUUUAUCCAUUUAACCCCACACGCGCUAUGUACUUUGCGCUCUCUCUCUCCUCUACAUGACAUUAUCACUUUUUUUUUUGUAUUUACCGAUAGAUGAUCCAGCCACCUGCUUCGCUCACGACGAGAAGGACUUUGAGUCGAAUGAAACCGUUUGGGCACUGUACGAGCGGUGGUGCAGCUUCCAUAGUGCGGAGCACGACCACGAUGACAUGGUCCGGUGGUUCGGAUGUUUCAAGGACAGAGCGCGCAGAAUUAUCGAGUUCAACAAGUCUAGCAAGCCUUAUAAGUGGGGGGUUGGGGCCUGGGGGCUCAACAUAUUUGAUGAUAUGACCCCGGAGGAGCUCUUCGAAUUUGGGAAUAAUUAACUAUUUGCCACUUUUACAAGUAGUUCUAAAGGAUUUGCCAUUGAACCCACACGUCAUAGACACAUGAGGGCCCACAUACAUGUCAUAGAUAGCGAGUGGCAAAUUCUUAAUUGUUAUAUCUUAAAAGUGACAAAUAGUUAAAUGUCCCCCGAAUUCAAGUGUCCACUGCUCCUGCAAAGGACUUACUAAUUUACCAAGAAGCACUUCAGUGAUAAUAUAAUGUUAUACUGAUUGAUCAUCUGCUAGCUACUUUAGGUUCAGCCUGAGUAAUCUCUACUAUACUUAAAAAGAAGCCUAGUGGUGGUCUUGAAUCCUUACCAGGCAGACCUGCGAAGUGUGAACCAUUCGAUCUCCAAAUCCAACGGCUCAGAUCGAGUUACCCCUUGUUCGCACGCCCACCACAUCCCCGUCGUUCGCACGCCCCUAUUCCCCCGUUUCUCUUCCCCUCGGCCACCUUUAACGCCGCACCCUAAUCGCCACUCGCGCCAUCUCCCACCUCGUUGGUACCCUCCGGCGCCCCCAAUCUCUGGUUCGUCAACCACCUCCGCGAGCGCUGCCCCCAACUUCCGGCUCGUCAACCACCUCCGUGCGCGCCGCGGGAACACCAACGACCACGCCGCCACCGAUUCGGAGUCGCCUUGACGACAUCUCAUCAGAUACUAACUGUUAUCCAGUGAAAGUUAUCCUUAGCAAAGGUAUAUUGUUACACACUUCUGCUUCCAUAUUUUUCGCUUUUCUCUGAGGAAUAUCUGGCAUUAUAUUGUCAUUUCUAUGCUUUUUGCAUCAACAUUGUAUCCUACAACAAAAUUUACUGUUUAGACUGGACUAUAUGAGAUUCCUUUCAAAUGUAGUUUGCACUCUGAAUUACAGAAUUCUGUUCAGUAAGCCAAACAUAAAGUUCAAGAUGAUAUUGUGUGUAUAGCCAUGUAUUCUUAAUACAUAAUCAGGACCAACAUCAAUGCCAAGCUCAGUUGUAUUUCUACGUGAUAUCGCAUUUCUUUAGCAUGCACCGAACAUUUGUCAAGUCCUCUUUUGACAAUCUGUGAUGGAUGGGUAAAACUGUAAAUGUAGUUUACCUACUGUAUGUUGAACCAUUUGACUUAUUUGGAAUUUGGACAUAGGAGUAUCAUGUCCAUCACAGUAUUAGAUCCAUAUGGUUAUUCUGGAUGGUUAUAGACCUACAGAAUGAUAGUAUUGCAGAUUUGCAGUGAUGUGUCCACUGGAUUUUUCGCUAUUAGUUGGUUUUGUAAUGUUUUGCAGCUUAGUACUGAUUUUUCGCUAUUAGUUGGUUUGUAUUUGUAAUGUUUUGCAGCUUAGUACUGAUGUUAGCAGAUUUCUGAGGUUCUGCUUUAGUUCAGAUUUCCAAUUGCAGUUUAGAAUUUUUUGUAAUCAUGUAGUUGCAGUCCAGUUUCCAGUGGGGUACUGAAUUUCCACUUGAGUGGAGAUCGUCUGAACUGAAAGCCAACAUUUGAGCUCAUGCUAUUAGCCUAUUACUGUAUCAAAUAAAACUUUGUUCUUUAUCAAAGAAGCCUUAUCAGAUUGGUGGAUCACCACCACCGACGGUAGGUAAGCUCCAUCCCUUUUGUUCUAUCCAAAAUUCCACGAAGAUCAGGUUAUGGAAUGAGAUGAACUAAUACAUCUGGAUUGGUGAGAUCAGGGUGAAUGGGGAUGUUUUUUUUUUCAGUUUUGGGAUGUUUCUCAUUUAAGUGUGAUGGUUAUAUUGAACUAUAAUGCAGGCAACACUGGCCCUUGAUGUUUUUUUCUGAAACAAAAACUGUCAGAUUAUAUCGAUCAAUCAGUAUUAACUUUGGCAACAUAAUAGGCUCACGGGGAAAGGAAACUCCCUCACGGAUUCUUCAAUUAGGAGGGACUGCAUAUUCAGCCGCUCUCUGCUGCUUAGUGGAUACUGGAUUUGAUUUAUGCAAUGAUCACAUCAGAGAGAAAUAUUAUCUGAUAGACAAUCAAGAGGUUUUAGGUUUUCAGAUAAAAUUUAGAUCAUUGCUCAAAAAGAAAACAACAUAGUGCUUGGUUACUAUGCAGUCCCUUCUGUAGCAAAACUAGCAAUACAUCAUGCCAAAUAAUCAACUUGGAAUUCAAUGUUGUGCCUUCUAUAAGAGAGUUAAAUAGUUUAGAAGAAUAUGGGUCAGAAUUAUUAUUAUUGAUUUGCUUCUGUUGUUUGCUACUGUACCAUCCUAUUCUGUUAAUGUACAGUAAAUUGUGUAAUUUUAUGUAACAAUUAAAUCUGAAUACUAUUAUAACAAUGGUAUCUUGAAAAUUUUGUAGUAUUGAAAACCACAUUCUGAACAUUAGUGCAAGUUCAGUUUUUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
33.13%
ME_num:
MEP:
62.4%
HE_num:
HEP:
4.27%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.82
Avg Expression:
8.29
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.01638330715208 | 0.00334336518822297 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.58942825006247 | 2.69841182633582e-07 |
| 3 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.90086546469949 | 0.000155769015246667 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.27945406955233 | 8.99774700823938e-05 |
| 5 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.17591550027201 | 5.49793013287696e-05 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.69124490060987 | 8.41145830821072e-10 |