Chr:
Chr12
Start:
7340869
End:
7344874
Strand:
-
Ref_name:
LOC4351841
Sequence
(XR_001541725.2):
CCUCUCGCGUUUCGCCCGCAGCCUUGCACGCCCUCGCCUUCCUCCCCUCGCGCAACCACGCGCACCGCCUCGCCCUUCUCCCUUCGCGAACACCGUCACCGCCGCAUCCUCGCCCACCUACAGCCAUCGUCGCCGCGCCGCCACUGCCGCCUCUUCCUCUCUUCAAUCUCGGCCCCGCCAGGCUGCCACCGCCUCCCUUUCCUCGCCCACUCCGCUUCGCUCUGCCAUAUCCGGCUCAGUGGUUGCCAGAUCCAGUAAGAGGAGCCUGGGAGGAGAAGGGAAGUUGAGAGGGACGCCAUCGCCUGGAGCGAGACACGCCCCAGCCGUGGCCCCGCGUCCGUCGCUCGCUGCGAGACAUGCUUUCCGCCCCGGUCGGUGCGGCGCCAAAUCCGCCUCGGGGAAAUCGGCUGACUCGCCGAUGUAUCCGGCUGCCCGGAGACGACGGACAUAAGCCGCCGCCAUAGUCCUCUUCUUCUCUCCCUCUUUGCGCUACUUGAUGUGCUGGUUCUUGCUCAAGGUCCACCAGAUCCGGUAGAAAGAGGUGGUAGGAGCAGUGGGCUCAGUGACGAGGUCAGGGAAGAGAAGGAAGGAGAAGGGCAGCUCAGUCAUGGCUGCCACGAGGACAGAUGUGGGUCGGCAGCUACUACGGCAAGGCCAGCGCCCAGUGCCACAUGUGCCGUUGUACAUGGCGCCUCGCCGCCCUCGCUUCCUCCAGUUGAAUCUCUUCUCCGUACUCUUCAGGUGAGUUUGAGAGCCACUAACCUGACCUUGCCAUAACUAAGUUUAGGCUAGUUGAGACAUGGUGGCAUAAGUGUGGCUUAGAAAUAGUUGGCCACAAGUGUGGCAAGCUUAGCUUCAAAUUUGAGAGUAUGACAUGUGGGUCCUAAGGCUAUGAAAGUGUGGCAUGACACAAUUGCCGUAACGAACCAAACACAUAUCUAAAAAAUUAUGGCAUACUUCCUCCGUUUCACAAUAUAAGUCAUUCUAACAUUUUCCACAUUCAUUUUGAUGUUAAUGAAUCUAAAUAGAUAUAUAUGUCUAGAUUCAUUAACAUCAAUAUGAAUAUGGGAAAUGCUAGAAUGACUUACAUUGUGAAACGGAGGGAAUAACUAAAGUGUGGUGUGGCAAAGUGUGGCAACCAACCAAACAACCCCUAAGCCAUGCUUCUUCUCCUAGCUAUGCUAACGGUUACUGGCUACUGUUACUACUGCUUGCUAUUUUACUGUUGUUGUAUUUCACGGAUAUUUGAUUUGGGCAUAGUUACUAUUGAUUAGGAUCUCACUAAUGCAGAUUUAAAGUAACUCAUGUGCUCAUCCAUUCCAUUGAAAAAUGGAACUUGCGCUGAGUUGGUGAUCUUUAGAUAUUACCGAUAAUACAAAUGUCUUUUUAAGUUUUUAUUUGUUGCAGUGUGUUAUUGGAAUGAGGGUCUUUUGGACUUGCUCUUGCCUAGAGCAACCGCUGAUUUUUCCCUCAUUAUGAACAUAUCAGGAAUGGCCAAUUCAUCACUGAAUAUUUUCUUGAUGUUCAUGAUUCCUAACACUAUGAAGGGAUGGCUGACAAUUUUGACUUUGGAGGGUUCAGUGGAAUCUAUUCAUGUACUGUGACCUGAAAAAUAUGAUAUUAUCAGGGAUUGCCAACUUGCAAAAUUGAUUUGAUUGAUAAGAAAUCCACGUCCCAUUUUCAAUGGCUCAAUGCGCUCAAGAGUCAAGAAUCUGUGCUGGUAAUGGUUGCUACACGAACUUUUCUGCAAUUACAGGUGAAAACAUUACAGCGUACAUUAUAGUUCAUCAUUCUAUCAUCGACAACUAAUAAGACUUUUACGGCUCCUUCGAUUACUCAGGCCUCGGUGCAGCUGUGCCAAUUGGAUUAGCAAUGAAAAUUCCUAGGCGUACUCACACAUUUGCAUGGGAAAACUCAUAUGUGAUUCCAAAACUAAUGUUGCAUCACAUAUCUGUUAUGUAAAUCAAAGUUAACAGUACAGCGAGCUUGAUGUUGCAAAUGUAUUGUCUUACACGAUUUGUCUAUUGCAGUUUUGCUAUAUAUGAAAUGCUUCUUGAAUGCAUCAGAA
Sequence
(XR_001541726.2):
CCCCCUCUCGCGUUUCGCCCGCAGCCUUGCACGCCCUCGCCUUCCUCCCCUCGCGCAACCACGCGCACCGCCUCGCCCUUCUCCCUUCGCGAACACCGUCACCGCCGCAUCCUCGCCCACCUACAGCCAUCGUCGCCGCGCCGCCACUGCCGCCUCUUCCUCUCUUCAAUCUCGGCCCCGCCAGGCUGCCACCGCCUCCCUUUCCUCGCCCACUCCGCUUCGCUCUGCCAUAUCCGGCUCAGUGGUUGCCAGAUCCAGUAAGAGGAGCCUGGGAGGAGAAGGGAAGUUGAGAGGGACGCCAUCGCCUGGAGCGAGACACGCCCCAGCCGUGGCCCCGCGUCCGUCGCUCGCUGCGAGACAUGCUUUCCGCCCCGGUCGGUGCGGCGCCAAAUCCGCCUCGGGGAAAUCGGCUGACUCGCCGAUGUAUCCGGCUGCCCGGAGACGACGGACAUAAGCCGCCGCCAUAGUCCUCUUCUUCUCUCCCUCUUUGCGCUACUUGAUGUGCUGGUUCUUGCUCAAGGUCCACCAGAUCCGGUAGAAAGAGGUGGUAGGAGCAGUGGGCUCAGUGACGAGGUCAGGGAAGAGAAGGAAGGAGAAGGGCAGCUCAGUCAUGGCUGCCACGAGGACAGAUGUGGGUCGGCAGCUACUACGGCAAGGCCAGCGCCCAGUGCCACAUGUGCCGUUGUACAUGGCGCCUCGCCGCCCUCGCUUCCUCCAGUUGAAUCUCUUCUCCGUACUCUUCAGUGUGUUAUUGGAAUGAGGGUCUUUUGGACUUGCUCUUGCCUAGAGCAACCGCUGAUUUUUCCCUCAUUAUGAACAUAUCAGGAAUGGCCAAUUCAUCACUGAAUAUUUUCUUGAUGUUCAUGAUUCCUAACACUAUGAAGGGAUGGCUGACAAUUUUGACUUUGGAGGGUUCAGUGGAAUCUAUUCAUGUACUGUGACCUGAAAAAUAUGAUAUUAUCAGGGAUUGCCAACUUGCAAAAUUGAUUUGAUUGAUAAGAAAUCCACGUCCCAUUUUCAAUGGCUCAAUGCGCUCAAGAGUCAAGAAUCUGUGCUGGUAAUGGUUGCUACACGAACUUUUCUGCAAUUACAGGUGAAAACAUUACAGCGUACAUUAUAGUUCAUCAUUCUAUCAUCGACAACUAAUAAGACUUUUACGGCUCCUUCGAUUACUCAGGCCUCGGUGCAGCUGUGCCAAUUGGAUUAGCAAUGAAAAUUCCUAGGCGUACUCACACAUUUGCAUGGGAAAACUCAUAUGUGAUUCCAAAACUAAUGUUGCAUCACAUAUCUGUUAUGUAAAUCAAAGUUAACAGUACAGCGAGCUUGAUGUUGCAAAUGUAUUGUCUUACACGAUUUGUCUAUUGCAGUUUUGCUAUAUAUGAAAUGCUUCUUGAAUGCAUCAGAA
Sequence
(XR_001541727.2):
CCCUCUCGCGUUUCGCCCGCAGCCUUGCACGCCCUCGCCUUCCUCCCCUCGCGCAACCACGCGCACCGCCUCGCCCUUCUCCCUUCGCGAACACCGUCACCGCCGCAUCCUCGCCCACCUACAGCCAUCGUCGCCGCGCCGCCACUGCCGCCUCUUCCUCUCUUCAAUCUCGGCCCCGCCAGGCUGCCACCGCCUCCCUUUCCUCGCCCACUCCGCUUCGCUCUGCCAUAUCCGGCUCAGUGGUUGCCAGAUCCAGUAAGAGGAGCCUGGGAGGAGAAGGGAAGUUGAGAGGGACGCCAUCGCCUGGAGCGAGACACGCCCCAGCCGUGGCCCCGCGUCCGUCGCUCGCUGCGAGACAUGCUUUCCGCCCCGGUCGGUGCGGCGCCAAAUCCGCCUCGGGGAAAUCGGCUGACUCGCCGAUGUAUCCGGCUGCCCGGAGACGACGGACAUAAGCCGCCGCCAUAGUCCUCUUCUUCUCUCCCUCUUUGCGCUACUUGAUGUGCUGGUUCUUGCUCAAGGUCCACCAGAUCCGGUAGAAAGAGGUGGUAGGAGCAGUGGGCUCAGUGACGAGGUCAGGGAAGAGAAGGAAGGAGAAGGGCAGCUCAGUCAUGGCUGCCACGAGGACAGAUGUGGGUCGGCAGCUACUACGGCAAGGCCAGCGCCCAGUGCCACAUGUGCCGUUGUACAUGGCGCCUCGCCGCCCUCGCUUCCUCCAGUUGAAUCUCUUCUCCGUACUCUUCAGGAAUGGCCAAUUCAUCACUGAAUAUUUUCUUGAUGUUCAUGAUUCCUAACACUAUGAAGGGAUGGCUGACAAUUUUGACUUUGGAGGGUUCAGUGGAAUCUAUUCAUGUACUGUGACCUGAAAAAUAUGAUAUUAUCAGGGAUUGCCAACUUGCAAAAUUGAUUUGAUUGAUAAGAAAUCCACGUCCCAUUUUCAAUGGCUCAAUGCGCUCAAGAGUCAAGAAUCUGUGCUGGUAAUGGUUGCUACACGAACUUUUCUGCAAUUACAGGUGAAAACAUUACAGCGUACAUUAUAGUUCAUCAUUCUAUCAUCGACAACUAAUAAGACUUUUACGGCUCCUUCGAUUACUCAGGCCUCGGUGCAGCUGUGCCAAUUGGAUUAGCAAUGAAAAUUCCUAGGCGUACUCACACAUUUGCAUGGGAAAACUCAUAUGUGAUUCCAAAACUAAUGUUGCAUCACAUAUCUGUUAUGUAAAUCAAAGUUAACAGUACAGCGAGCUUGAUGUUGCAAAUGUAUUGUCUUACACGAUUUGUCUAUUGCAGUUUUGCUAUAUAUGAAAUGCUUCUUGAAUGCAUCAGAA
Sequence
(XR_003240072.1):
CCCUCUCGCGUUUCGCCCGCAGCCUUGCACGCCCUCGCCUUCCUCCCCUCGCGCAACCACGCGCACCGCCUCGCCCUUCUCCCUUCGCGAACACCGUCACCGCCGCAUCCUCGCCCACCUACAGCCAUCGUCGCCGCGCCGCCACUGCCGCCUCUUCCUCUCUUCAAUCUCGGCCCCGCCAGGCUGCCACCGCCUCCCUUUCCUCGCCCACUCCGCUUCGCUCUGCCAUAUCCGGCUCAGUGGUUGCCAGAUCCAGUAAGAGGAGCCUGGGAGGAGAAGGGAAGUUGAGAGGGACGCCAUCGCCUGGAGCGAGACACGCCCCAGCCGUGGCCCCGCGUCCGUCGCUCGCUGCGAGACAUGCUUUCCGCCCCGGUCGGUGCGGCGCCAAAUCCGCCUCGGGGAAAUCGGCUGACUCGCCGAUGUAUCCGGCUGCCCGGAGACGACGGACAUAAGCCGCCGCCAUAGUCCUCUUCUUCUCUCCCUCUUUGCGCUACUUGAUGUGCUGGUUCUUGCUCAAGGUCCACCAGAUCCGGUAGAAAGAGGUGGUAGGAGCAGUGGGCUCAGUGACGAGGUCAGGGAAGAGAAGGAAGGAGAAGGGCAGCUCAGUCAUGGCUGCCACGAGGACAGAUGUGGGUCGGCAGCUACUACGGCAAGGCCAGCGCCCAGUGCCACAUGUGCCGUUGUACAUGGCGCCUCGCCGCCCUCGCUUCCUCCAGUUGAAUCUCUUCUCCGUACUCUUCAGGUGAGUUUGAGAGCCACUAACCUGACCUUGCCAUAACUAAGUUUAGGCUAGUUGAGACAUGGUGGCAUAAGUGUGGCUUAGAAAUAGUUGGCCACAAGUGUGGCAAGCUUAGCUUCAAAUUUGAGAGUAUGACAUGUGGGUCCUAAGGCUAUGAAAGUGUGGCAUGACACAAUUGCCGUAACGAACCAAACACAUAUCUAAAAAAUUAUGGCAUACUUCCUCCGUUUCACAAUAUAAGUCAUUCUAACAUUUUCCACAUUCAUUUUGAUGUUAAUGAAUCUAAAUAGAUAUAUAUGUCUAGAUUCAUUAACAUCAAUAUGAAUAUGGGAAAUGCUAGAAUGACUUACAUUGUGAAACGGAGGGAAUAACUAAAGUGUGGUGUGGCAAAGUGUGGCAACCAACCAAACAACCCCUAAGCCAUGCUUCUUCUCCUAGCUAUGCUAACGGUUACUGGCUACUGUUACUACUGCUUGCUAUUUUACUGUUGUUGUAUUUCACGGAUAUUUGAUUUGGGCAUAGUUACUAUUGAUUAGGAUCUCACUAAUGCAGAUUUAAAGUAACUCAUGUGCUCAUCCAUUCCAUUGAAAAAUGGAACUUGCGCUGAGUUGGUGAUCUUUAGAUAUUACCGAUAAUACAAAUGUCUUUUUAAGUUUUUAUUUGUUGCAGUGUGUUAUUGGAAUGAGGGUCUUUUGGACUUGCUCUUGCCUAGAGCAACCGCUGAUUUUUCCCUCAUUAUGAACAUAUCAGGAAUGGCCAAUUCAUCACUGAAUAUUUUCUUGAUGUUCAUGAUUCCUAACACUAUGAAGGGAUGGCUGACAAUUUUGACUUUGGAGGGUUCAGUGGAAUCUAUUCAUGUACUGUGACCUGAAAAAUAUGAUAUUAUCAGGGAUUGCCAACUUGCAAAAUUGAUUUGAUUGAUAAGAAAUCCACGUCCCAUUUUCAAUGGCUCAAUGCGCUCAAGAGUCAAGAAUCUGUGCUGGUGAAAACAUUACAGCGUACAUUAUAGUUCAUCAUUCUAUCAUCGACAACUAAUAAGACUUUUACGGCUCCUUCGAUUACUCAGGCCUCGGUGCAGCUGUGCCAAUUGGAUUAGCAAUGAAAAUUCCUAGGCGUACUCACACAUUUGCAUGGGAAAACUCAUAUGUGAUUCCAAAACUAAUGUUGCAUCACAUAUCUGUUAUGUAAAUCAAAGUUAACAGUACAGCGAGCUUGAUGUUGCAAAUGUAUUGUCUUACACGAUUUGUCUAUUGCAGUUUUGCUAUAUAUGAAAUGCUUCUUGAAUGCAUCAGAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.2%
ME_num:
MEP:
18.5%
HE_num:
HEP:
81.1%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.59
Avg Expression:
17.35
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.11323026870148 | 1.39287431266229e-05 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.29962280753894 | 2.91649485266237e-09 |
3 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 1.05876545828256 | 0.0379472762141069 |
4 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.10323281654264 | 2.77127071017696e-05 |