Chr:
Chr12
Start:
1594391
End:
1599520
Strand:
+
Ref_name:
LOC4351425
Sequence
(XR_001541688.2):
UGCUUUGGAUCGCGAUAGGGGUUAUUUUCAAUUUACCCCUUAUUUAUUUAGGAUCGCUAGCUAUCAACAGUAGCGAUCCUGAUUUUUUGCAUUUUAGCCCCUGUUUUGAGUGGCUCAUCGCGUUUCGCUCUCGCCUCCGGCGGCGCCCGCCGCCGGCAUCGCCGUGGGAGCCCCGCCCAACCAUGCUCCUCUUCUCCGCGGGAAGAGAAAGGCUCCUAGAUCACUGCGAGAGCUGCCCCCAACCCAAUCAUCGCCGCUGGCCGCUGCAGCCGGAGAGGGGGGGGGGGGGGGGAAGGACGGGAGGUUUCCGGCGAGAAGCAAGCGCGCUACGUCUACGCGCGGUUAGUCCCGCCGUAUCUCCUCCUUGAAGGUGAGCUCCGACGCCAAGGCAGCUAGCUGCUUUGCUGCUGGCUCCUGGGUCCAGGCUGCUGAAGCUGAACAGAACACCGUCAUGGCCCCGGCAGCGGCGAUGCAAUCCGAAGAUGAUGAUGACUGGCUUUUGAGUUUUGACAGAGUUCCUUCAGGCUAAACUUAACUGUCAACUACUAAGCUGUCAGCCUAGUCAAGUAGGAGUAGUGACCUCAAAAAGGGGAAAUGUUGACAUCUGAGAACAUGAACUACCUUAAAAUGUUGUUCUGUUUAAAAAGUAAUCAUUGUGACAAGAUGCAACUAAUACACCAUGAUGACAAAAUUGGACAUGUCAUGCUGACUGCAGCCAGAUUCAUCAUUCAAGGACUUCCAUUUCUGUGAGCAGACAAGCAUGCCACAUAUUUAAGCUAUGCCUCAUUACUCAGCCCAUUAGCAAGUGUUAAGUAUUAUUACUGUUUCAAAUUUAUUAUUGAUAAGAAACAAUUCCUCUGCACUUGGCUAACUACACUCAUCUGAUGCCUCAGGUAACACCAUAAAAGGCUCAAAAGUAAAUAUGAGUCCAAUGAGCUCCACAAAGUUCAGCAUCAAGAACACCACUUGAUCACCUACAGAUACUUAAAAUUUGAAGGAAGAGCUUUGAAAUUGCUUACUGCAAGAGCACUUUUCAUCAUUGCCGCUGAAUAAAAAGCUAAGGAAAGUUCCGCGCCAGAUAGGUCCCUUACCUAUGAAAACAGAGAUGAUUGAAUAAGCCAGAGUAUUCAAUAUGCGAAAAGGGGAUCACUGAGAUGCAACUUGAAUGAACCAGUAGAGAUCUUGAUAAAGAGAACUACGGGGCAGGCACUCCCGUUAUAUAUGCUACAUAGAUCUGAAGAUGAUGGUUUGACGUACAAACUGAAAUCGUGUCAGAAAUUCAAGGAAGGCUAUGAGUUUUUCUUUUAGACAAAGGACCAAUGAGUCCAGCUAUACAAAGCAAAACGGUGAAGGCUACAGUUGGAAUAUCUCAUGAGAUCCAAGUUGCAACCAAGUGGUAAGGUAUAAUGGUUAGGGAGAAAUGUGUGAACUGGGACAUGCAUUCGAAAUGAUCCAGGGUUCAGAGAUUAAUUAGGAAUGAUGCAAAGCAGUGUCCUUCAAGUUAGGUAAACGUCUUUGUGCGACGCAGGUGAUACUGUAGCUCAAGACGCAUGAUGAAAUAAUUAGAUGGAGAAGUGAAUACAUACUUACCAUGAAGUAGAGGAAGGGGAAGAGGCACGUGAUUGGUAAAGCUGCAAUAUUUAAAGGACAGAGGAAGCAAUAAAUCAGAAACGAGAUGUGCAGCUUGCAGCAUGAAGGGAACAAACACAAGAAUCCUGUUAUUCACGACAAGAAAGCAUGUGCUUGCUCCUGCUGCUGUUUGUGGUUAGUUACGCUAUUGAUCUCCAAUAUUAAUAUGAUAUGUAUACUGAUAGUACAUAAUUGCAUAGGUGCAUAGUGCUGGAACAGAUCUCAGAUAGACAGAUACUACUUGCUAUCCUGAACAAAUUUUACAUGCAUGUUUGAGCUUCAAUUCAAGCGGCUCCACAAGUACUCCUAUAUAUAUAGGGUUAAUUGGAUCAUGCCAUUAUAUAUUUACCUGUUUUGUGAUA
Sequence
(XR_001541689.2):
UACCCCUUAUUUAUUUAGGAUCGCUAGCUAUCAACAGUAGCGAUCCUGAUUUUUUGCAUUUUAGCCCCUGUUUUGAGUGGCUCAUCGCGUUUCGCUCUCGCCUCCGGCGGCGCCCGCCGCCGGCAUCGCCGUGGGAGCCCCGCCCAACCAUGCUCCUCUUCUCCGCGGGAAGAGAAAGGCUCCUAGAUCACUGCGAGAGCUGCCCCCAACCCAAUCAUCGCCGCUGGCCGCUGCAGCCGGAGAGGGGGGGGGGGGGGGGAAGGACGGGAGGUUUCCGGCGAGAAGCAAGCGCGCUACGUCUACGCGCGGUUAGUCCCGCCGUAUCUCCUCCUUGAAGGUGAGCUCCGACGCCAAGGCAGCUAGCUGCUUUGCUGCUGGCUCCUGGGUCCAGGCUGCUGAAGCUGAACAGAACACCGUCAUGGCCCCGGCAGCGGCGAUGCAAUCCGAAGAUGAUGAUGACUGGCUUUUGAGUUUUGACAGAGCCAGAUUCAUCAUUCAAGGACUUCCAUUUCUGUGAGCAGACAAGCAUGCCACAUAUUUAAGCUAUGCCUCAUUACUCAGCCCAUUAGCAAGUGUUAAGUAUUAUUACUGUUUCAAAUUUAUUAUUGAUAAGAAACAAUUCCUCUGCACUUGGCUAACUACACUCAUCUGAUGCCUCAGGUAACACCAUAAAAGGCUCAAAAGUAAAUAUGAGUCCAAUGAGCUCCACAAAGUUCAGCAUCAAGAACACCACUUGAUCACCUACAGAUACUUAAAAUUUGAAGGAAGAGCUUUGAAAUUGCUUACUGCAAGAGCACUUUUCAUCAUUGCCGCUGAAUAAAAAGCUAAGGAAAGUUCCGCGCCAGAUAGGUCCCUUACCUAUGAAAACAGAGAUGAUUGAAUAAGCCAGAGUAUUCAAUAUGCGAAAAGGGGAUCACUGAGAUGCAACUUGAAUGAACCAGUAGAGAUCUUGAUAAAGAGAACUACGGGGCAGGCACUCCCGUUAUAUAUGCUACAUAGAUCUGAAGAUGAUGGUUUGACGUACAAACUGAAAUCGUGUCAGAAAUUCAAGGAAGGCUAUGAGUUUUUCUUUUAGACAAAGGACCAAUGAGUCCAGCUAUACAAAGCAAAACGGUGAAGGCUACAGUUGGAAUAUCUCAUGAGAUCCAAGUUGCAACCAAGUGGUAAGGUAUAAUGGUUAGGGAGAAAUGUGUGAACUGGGACAUGCAUUCGAAAUGAUCCAGGGUUCAGAGAUUAAUUAGGAAUGAUGCAAAGCAGUGUCCUUCAAGUUAGGUAAACGUCUUUGUGCGACGCAGGUGAUACUGUAGCUCAAGACGCAUGAUGAAAUAAUUAGAUGGAGAAGUGAAUACAUACUUACCAUGAAGUAGAGGAAGGGGAAGAGGCACGUGAUUGGUAAAGCUGCAAUAUUUAAAGGACAGAGGAAGCAAUAAAUCAGAAACGAGAUGUGCAGCUUGCAGCAUGAAGGGAACAAACACAAGAAUCCUGUUAUUCACGACAAGAAAGCAUGUGCUUGCUCCUGCUGCUGUUUGUGGUUAGUUACGCUAUUGAUCUCCAAUAUUAAUAUGAUAUGUAUACUGAUAGUACAUAAUUGCAUAGGUGCAUAGUGCUGGAACAGAUCUCAGAUAGACAGAUACUACUUGCUAUCCUGAACAAAUUUUACAUGCAUGUUUGAGCUUCAAUUCAAGCGGCUCCACAAGUACUCCUAUAUAUAUAGGGUUAAUUGGAUCAUGCCAUUAUAUAUUUACCUGUUUUGUGAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.41%
ME_num:
MEP:
29.07%
HE_num:
HEP:
70.33%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.55
Avg Expression:
13.23
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | -1.03364270203721 | 0.00102724140222037 |
| 2 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.4005103261871 | 0.000414277388566551 |
| 3 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.4006078640195 | 0.000428537705536174 |
| 4 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.40071511931512 | 0.000416972615900092 |
| 5 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.12476190943099 | 2.85431942262768e-05 |
| 6 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.16416499737986 | 2.54044051962798e-05 |