Chr:
Chr11
Start:
27717430
End:
27721101
Strand:
+
Ref_name:
LOC4351135
Sequence
(XR_001541043.2):
ACCCUAGCAGCGGCAAAAAAAAAAAAGGAAAAAGAAAAAAACCCUCGGCCGCGACGGUUCCAUCGCCCCUCUCAUCUCUCUCGCUCUCUCCGGCGCGAUGCGCCGCGCCGCCUGGAUCUCGCCGCGCCAUGGCCGCCGCCCGCUCUUCUCCUUUUGCGCCCGGCACAGCGACAAUGACGGCCACGCGGAUCACGUGAGUGAACUGGUGGCCGCCCUCAACUCUUCUCCCUCUCCAUCCCCAUUCUCUUCCUUUCCGGGUAGGCGGAGGCCUGUGACAACGAUGGCCGCGCGGGCGAGCCGUCGAGGAGGCGGAGAAUCACCAGAUCUGGUAGGGCGGCGGCCCGAUUCGGAGAGGAAGCAGCCCGAUCUGUGACAUUGGCUUCCAUUUCCGGCCAGCGGUGGUCUCCAGGACGGCGGAUGCCGCUGGAUCUGAUGGAUGGUGGGCUCCUGGUUGGCUCCAAUGCUCCAUCAUACCUCCCUAUUUGCUUUCUUCAAAGGAGUCUGAGGUAGAUGGUGGACCACUGAUCUCCUCUCGUGCCCCUGUGUUCGUGCACACCACCUCCGCACCGACUUACCAUGCAUGCCGGCGUAUGCGGAGGAGCCUAGGUGCCGGCUACGGUGAGCUUACACGAAGGGCAUUGGUGGGUUCCCAGAGGGUGGUGGCAUCUCCAUCCCCACAUGUCGCCGCCUUGCUGCCUGGCCCCGGUUGUCGGUCACAGCCUCCAUGUCAUCAGCCACUGUGACCAGGUUGCAACUCCACCACUCUUUCACCUAACGUGACCCACUAAGAAGCUCAGUUUGAUGGCGAUGAGGUUGCUUUGGUGUUGUAGCUGUCAAUCUGGCUGGGCAUUUCUUUCAUGGGUUCAUCUAAGAUUCAUCGUAGUGUGUGCUGAUGACUUUAAAUUACUAAUGAGUUACUGCACAAUAUUAUUUGUUUUCAAGUAUAAUAAUUGAUAUAUCUUUGUAGUUGAAGUACAAGUACGCUGAUUUGUUCCAACAAAAUAUAUCAAUGUAUAAUACUUUUAUGGAUGAUUCGAUGAUGCUUCAUCCAAAUGUAGUCAUGCAUAUUAUGUCAAAAUAGACUGGCUUUGCACUUUUAGUUCGUUCAUUACGAAUAGCAUCUUUUUUAAUUAUCAUGUCCCUGAAGGUAGCGGAUUCUAUUAAUCUAUUAAACUAAUUUAUAAUGAGCACGUUUGUAACUUGACAUUAGCUGAAUUUUUACAUGCAGAACCUGAGGCUAAGCUUAUGCACUAGCUGGUAUGGUACUACUGCUACUGCGACCCUAAAAAAGCUAAACCAUCUAGAUCAGAACUCUAUAUUAUUGUUAAAACCUAAUGAUCUGCAUUACAGUGCUUUACUCUAUUUUUUGGAUGUGAUUAUUAAAGCUCGCUAUGUGUCUGUUCUUUUUUGCAAUGUAUAAAAUCAAUUUAUCUCAAAAUUUGUUGCUGCUUUGAUUCUAUUUCAAGUUGCCUAAUCUGCCCAACGUCAAUCAGCUGUCACCUUACAAUAGAUUUCAUUAUUGCUUUGCAAAUAAUAUUAGAAGGGCCAAAGAAAAUGCGAUGAAUUUUUGCAAGAUCAAAUUUUGGCAUUGUUGUCUGCUAUAUUAGUUGCUGAUGAAAGAAUUGUUAUUUAAUUUCACUUCUCUAAUUCUUAUAGGCUUUAGCUGAUGUAGUGGUUUCAGUAGCAACAUGAUAGGCUUAUGACUCCCUGAAUCAGAACAAAGGAUGCCAACAUUGGUGUCCUCUUCUAGGAGGGGCAAUGGCACCGCUGGCAACCAGCAACAUACGUGAUUGGUGCAUUUUGUUUGGCUGACCAUUGUAUGUUGCCUCCUUAAUUUGAGUUCACCAUUUCAUUAUAUAUGUCGGAAGCGAAAAUUUAGUUGAUUGUUUAUUAAACUAUGUGCCUUGCAUAUAUUAGUUUUAUGAUUUAGUUAUUUGUGAACAAGAAAUCUGUUGCAAGUUAUAGCUAAAGAUUGGUAGAGUCAUAAAAGAUUUAAUUAUCAUGAUAUCAUAGGCAUUAGCUCUGAACAUAUUAAAUAUCAUGAUAUCCACAUCCCCACGAUGUGCAACCCAAUUUAACUCGAUAUAAAAAGAUGAUGUUUCAUUGUUUUCUAAUUUGCAUUCAAGUAAUGCCUAUGAUGUUUUGCAAAUGUAACUGACUUAUCCUUCACAUGCUUCUCAUGUUGUGCAUUGGAUGGCAUGAAGUUGAUAUUGCAACUCACUUUGAAUCUUCUACCUAAUGCUUCUAAUAUUUAUACCCAUUUUUACUUAGCAUGCGAUGAUUAGUUAGCGCUUAGACUAGCAUAUAAAAAGAUUGACUUUUGAUUGGGUCCUGAUUCCUGAAGUUGGAGUUUUCUUUGAAAUGACUAAUGAUAUUAUUUGCUCUUGCCAUAUAAGUGACUUUUCAGGACUCUUGAUAUAUAAUUAUUUGUUUGGGACAAUAAAGCUUCGGUUUAGGAUGAUGAGCUCUGCCCUGCAGCACUUCUCAAGCAGCUAUGUAAAGUGGAAGCGAUUAGACGUAGCAAAUUAUACGCCUCUUCCAUUUGCACAUCAACUAAAAGGCCCUUGCAGUGAAUUCAAAGGGAAAAGGGGGCAAUUGCUGCAAAGGCAUCCAAACCACAUUAGAAUUUAACCAUUUGUGAUGUGUUCGUAUGUAUUCAUCUAGCGGAACUGUUUCUAUUCUAUCACUGUAACACUACUAUGUAUUGUCUACCCUUACACCAUACAUGUGCCAAAUUUCGCUAUAUAUAACUGUCUACGAUUUGCAUGUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
43.09%
ME_num:
MEP:
11.59%
HE_num:
HEP:
45.12%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.76
Avg Expression:
22.84
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -1.26395610264197 | 3.71516287499155e-05 |
| 2 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -1.0924517684672 | 0.00582208667874877 |
| 3 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.25451959276221 | 9.85130412975464e-05 |
| 4 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.25461667347662 | 0.000101490924937655 |
| 5 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.25472850830965 | 9.93965100951703e-05 |
| 6 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.37001049285681 | 0.000301941837513173 |
| 7 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 1.02297162711958 | 0.0124159637718766 |
| 8 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.99681366585815 | 5.24303346034313e-33 |