Chr:
Chr11
Start:
27697083
End:
27702252
Strand:
-
Ref_name:
LOC4351134
Sequence
(XR_003239262.1):
UUCGAGUGAUGUAUACCAAAGGACAGACAAUGUGGAAGAAAGGAAAGGAGUGACGAUCGACCUUGGGAAUUAGGAAAUGAAGCAAAGUGGGGAACAGAUCUGUCCUAUUUGCCUUACCACCCCAUUUGUGCGCGCGGAGAGCUUGAGACAUCUCUCAUCCUACUCUUCGUCAACUUAGAAUCGAAGAUAUCAAAUGGAGGAGGAGGUUCUGUCGACCUGUGGCUUGUGGGGCGCCAUGCCGAGCCUCCCCGGUAGGCUCGAGGGGCUUCUGCGUCGUCACGGCAACAUCCUGCCCAACGGGGCAGAAGACGAGUUACCACUCAUCAAGCAGGAUGUCGAGAAGAUAAUCUCCAUUCUCCAUGGAUACAGCAAGCCAAAACUGGAGGACAAUGCCAUGGUGGUGAGGUGCUGGAUGAAGGAGGUGCGAGAGCUGUCCUACGACAUCGAGGACUGCAUCGACCACUAUGAGCAUGCCAUGGCCAACUCUCGAAGCGGAUUUAAUGAUAAUAUUCGCCGCCGUAAGUUCAACCGGCGGCAUGGGAACAAGCUGCCACCUUGGGUUCAAGAGAAGCUGAAGCAGCGGCUAUGGAUGGCCAACAAGAUGAGAGAGUUCAGCACACGCGCGCAGGAGGCGCUUCAACGCCAUGCCAUGUACAGCAACCAUGCAUGGCGUAGCCACCACCGCUGCCAUUGCUUCUACUAACACCUGUGGUAUCGAUGUAUCUUCUAGCUCUUCUUUGCGUCCUGUGCGGUGCGAGGAACGUGCCGAGGACGUCCUUGUUGGGGUUGACUCCGCCAUGAACAAGCUCGAGGACUAUCUGUCUGGACACGCAGGAGAGGAGAAGCUCAGGGUGUUGUCUAUUGUUGGAUUUGGAGGAAUCGGGAAGACCACUCUUGCCAACGAGCUGUACAGAAAAAUUGGACGGCAAUUUGAGUGCCGGGCAUUUGUGCGGGCAUCCCAGAAGCCUGAUAUGAGGAGAUCCUCACCAGCAUUCUCUCGCAGCUUCGGCCGCACCAGCCACCUGACCAUCGGAAGGUGCAUAGCCUAAUUUCCAGUAUCAGGGCCCAUCUGCAAGAUAAGAGAAGCUCGAACGAGACCGAGAAAAGUGCAGUUGCUCAAGCAAUCGGAAUAAUUAGUCUGCCCAAUGGAUGGCCGCCAAUGCUAUGUUGUACUACGUACUGAUGUGUUUCGGCGAACCGAAGAUUUUGCUUUAAGGGAUUAUACAUUAAUUAUAAAAGAGCUUGGCAUGUCAGGUGGGGACUUUCAUACCUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
79.88%
ME_num:
MEP:
15.65%
HE_num:
HEP:
4.27%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.89
Avg Expression:
2.51
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.79702279567604 | 0.00205546691678246 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.59150470922065 | 6.87981297856761e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.66045434169644 | 3.07584139335311e-05 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.53902496498094 | 2.56592208418599e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.90149752424986 | 6.18287968535848e-07 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.3801331149833 | 0.00811751995093502 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.74153842376072 | 4.64106216939491e-07 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.64909903273094 | 0.00188128450151968 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 4.3312641629053 | 8.57509585293573e-09 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.77906460502732 | 0.000510695680683714 |