Chr:
Chr11
Start:
26203533
End:
26206035
Strand:
+
Ref_name:
LOC4351042
Sequence
(XR_001541016.2):
ACCCUAGCCGCCAGCCCACUCGCUGCCCCUCCCCCUCUCUCGCUUUCUCCCCCUCUCCAGGCGGCGACCGGGCCUCGCUCGAUUUUCCCUGCCGGCGACAACCUCUCCCGCGCGCCCUCCGCUGCUCUCCGUCAUCUCCUCCUCUCGACCCUGCCACUCCGUCGCUGCAGCACCAUGGUGGAGACUCACCGAAGCACCACCACUGCCGCCUCCAAGUACUCCUCCCUGUCCCCUUCCUCCUCCGCCGCCAAGCAGCGGCGCCCGCGCCCGCAAAGAGCGCCGGUUCGUGCGAGGAUGCGUUGGCGGCCAAGAGAGGAGGAGAUAGCUGGCGGUCACAGCGGCGGAGUGAAUCUGCCUGGAACUUGUUCGUUCUUAAUGGCAUUCUCAACAGCACUGCAUAGCCAGUGGAUCUUGCUUAGAUCCGCUUGUGCUUUGACGCCGGUCUGCUGGUCUUUGGUUAAAAAAUGCCAGAUUCUUUAUGCAUGGUCAAGCAGCUGAUAGCAAUGAAAGUAAAAGCAGCGGGAGAUGCAAGUUUUUCUUGACUGGCAGGUAGCUGAUGUUUUUCUCUCUUCCUCUAAUAACCUGAAUCCAUUAAAAAAAGAAAACAUAAUUUCUCUUACUAUAGUUGUUUAUUUUACUUGCCAAAGGUCCUAACCACAAUAAAAGAAGUCGAUAGCUAGCUACCUCUUGUUUGGCUGGUAGUGGUGUUCCCUGAGUAAUGCAGGCAUGAUUGCGAUUGUAGGAGCCUUAGGGAUUGUUCACUUCAUCGCCGCUUGCAACCCUACAAAUUUUUUUUGUUCCCAAAUUUUGCUAAUUUAACAAGCUAAAUAUGUUCUUACUAUCUCUACCCUACCAAAAUUACCUAUUUUCUUAUUUUCAAAUUUUGGCCCAACUAGCUCCUACCAUUUCUAACUUUCAUUUCUUACUAAUUUAAUUAACACUAUGAUUAUGUUGGACUACUACCAUUUCUAACUUUCAUCUCUUAUUAAUUAACAUUAUGAUUAUGUUGGAAAUACAUACCUGUUUAACAUGUAGUUGCCAGGUCAACAAUGAUGCCUUUGUUUUAAAGAUUCUAGAUUCGAACCGAAGCUACAUCAAGUUACAAACUAGGCCUCUUGCAGUAUAUGAUCAAGAAUAAGUUCCACUUUCAUGACAUCAAAUUUGUAUUUCAACUGGGGAAAGUAUUUCAUCUAUGCGACCAAUGAGGCAUAUAUCUAUGCUUUUGACUUCAAAUUCAACCUGCUAAAGAUUCAUUGGAUUGACUUGAGCAUCAAAAUUAGUGUAAUUAGCAAAGCAUUGCUGAGAAUCAUUCAUGUUAUAUAUUUUGCACCAAAAUUUGUAUCAUGUUAUUGCUUACUAUUAUAAUGAAGCGGUUGUCCUAAGUGACAUUGAGAAUCAGUGUUAUUUGUAAUAACAACUAGAUCAUAUCCAUGGUGCUUCUUGUUACAAGAAAUUGAUGAUCAAUUUUUAUUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
3.86%
ME_num:
MEP:
35.57%
HE_num:
HEP:
60.37%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.66
Avg Expression:
31.40
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.80981577045668 | 3.4499841482982e-12 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.85639737598747 | 4.00572967414803e-13 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.57604835791187 | 4.56981715282419e-10 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.38704925281441 | 3.15616383593208e-06 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.39030247868025 | 6.93555703884281e-08 |
| 6 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 3.26136690645946 | 0.000265158293474053 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.5976769485774 | 8.2763012984399e-11 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.08120439995628 | 0.00187479638202432 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.10155558395959 | 0.000251271240830991 |
| 10 | 9L136 // leaf // control--/--9L136 // leaf // salt | -1.34613313377146 | 0.000528241632382857 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.05140086652792 | 3.62362409218253e-05 |