Chr:
Chr11
Start:
23346613
End:
23348599
Strand:
+
Ref_name:
LOC4350880
Sequence
(XR_001541272.2):
CCCAAUCCCGUUAUCGAAACAAUGCCUAAAUUUUUUCCCCUCAUUCCCAGUGGCUCGCCGCCACUACUCUUCCUCUCUCUCUAUUCUCCCUGAUGCCGGUCCUAGUGUCGGCGCCUCCGAUGAACGGGGAACCACGUUGCUGCCCUGCGCCAUCCACAGGCCCUGUCAAUCUGCCAUCCGUCGCUGCUCAUCUCCGGUCGACGACGAGCCUCCGCCGACCCUCCCCCUUCCGGUGACCGGUCCUAGCCACCAUGGACUCAGGUGCUCCAGAUCCGGACACCCUGAACUCGGAGGUCGCGGAUCCAACCAUCCCGAGUUUGGGUACUCCAAAUCCCACGACCCUAGCUUCACCAGCUCCAGAUCCGGCCUCGAGGUAAGCGGUCCGCCGUCCCUCACACCACCCCGCGUCGUCGAGGUCGACCUGCCAUGGGGAGAGCAGGCGCCAGCUAUUCCCCUUCCACCCGAUCCUCGGUAGUCACUGCCUCAUCUCUUUUAAUCAGGUUAGUGGUCAGUAAAAGCCGCCCUUGCCUUUCCUUGUGUCCAGAUCUGAGUUGGUGCAUCACUAAGAUCUGUUGCUAUUUUCCUUGUUAGACCUCUUAGCAUAAGAAGUUUUUUUUGGUGUGUUUUUGGAUACUCUACAAAUCCCCCAAUUUCUAUGCUAGCUGAACAAAUUAGACCUAGUUCUUUCUACGAAUCGUGAGCUUCCUGCCAGUUGAUGUCUUUCCAUCUCUUUAGGAGAGUAUUUAACUACUGAAAUGCAUAGUGCAUAGGGAGGACACUAUGAAGGAUGGGUGAAAGACCAAGGAAUAUUAAUGUGAGGUAAAUUUAUUUUUGGCUUCUCACUCAGAAUACCCCCAUUUUAUUUUGCUGUUUUGAAGCAGCUUAUGUUGAGAUCUACAUGCAAAACUAGGAAACGGUGAUUUGUUUGACAUGGAAUUAACCUAUCAGUGGCUUAGAAAAUUAUGAUACUAGCUUUAUGAUAAUUUUAAAGGAUAAUAUAUCUGGAUAUUAUUCUUUUUUUAUAGAAUUGGAUAUAGAAUUUACUCCUUAUCAUAGACUAUGCUUUUAUUGGUCACAUUUAGUUAGAAUUUAGAUGUUGGUUAAUAUCUUCCCUAGAAAAAUAAAUCUAGUUAGAAUGCAGAUGCAGAUGCUUUUCUUAUGCUAUUUUUGCCUUGUCAUUCAUGGUAAUGAUUGUGUGAAUGAUGAACACUAUAGUGUUUUGCUUUCUCUGUUUCAGGAACAAACAAAACAUUUAUUUAGCUCUGUUUGUAUGUAUGAAUACAUUAGUGCUUUCCAGUCUCUUGUACUCUGGUAGUGCAUAUACAUACUUCACACGUCUAAAUCCAUGUAUAUCUUUUGGCAAGACAUACUGAUACAUGUGUUGGAUAUAUACAUGCCAUCUAAACAAAAUUAAUUUCAGUCUCUUUGUUUUUAAAAUUUUAUUAUGUACAAACCAUUUAUAAUUUACCUUAGCUUGCAGCUUAAAUGCCGCAGUUAAAUAUCUGUAGAACGUUGUACAACAUGAAAAAUCAAGGUUGAAGCACCACAGAACUUGGAUUGCUGCUGGAAGACAAUUUCCUUGUACAUGUAUUUGAUGAAUACAAUUGUAACUGAACACAUUGAACUUCCUUGAGUAACUGAACACAUUGUACAUGUAUUACUAACUCUGAUUUGAAUGAAUUUGUUGGUACUGAACUUGGAUGGACUAUUCAUGUAAGCUUUGAAAGCUUGAAUUUUGAUGUUUGAAUUGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
28.46%
ME_num:
MEP:
2.64%
HE_num:
HEP:
68.7%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.58
Avg Expression:
22.90
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.39520963069055 | 1.12284578252363e-12 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.51973064665283 | 9.40449833448414e-18 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.27307718176989 | 5.96199120440785e-12 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.33972218956218 | 1.65499502872455e-10 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.18357377333355 | 6.17224051004119e-11 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.02902536092996 | 3.7389673969305e-06 |
| 7 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -1.03371225400251 | 0.00021960807586131 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.27003162756761 | 4.28933813254704e-12 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.13202058163009 | 3.31446472090709e-08 |