Chr:
Chr11
Start:
22131123
End:
22132143
Strand:
+
Ref_name:
LOC4350795
Sequence
(XR_003239183.1):
GACGAGUCGGCGAGACCGGCGUCGCCGUCUGCAAAGUCGCGGCUGUUCCCGGCCAAGGUCAAGGGGAGGGUGGGACCCGUUUCUGCGGCGGUGGCGAGCGCGGCUCGUCCGCCUCGCCGCCGUCUUCGUCGCUGCGGCCCUCAUCCUGACAGCUUCGGCCAAGAAGUCCGGAGAUGUCACGGAGCUUCAGAUCGGUGUGAAGGUGUCUCCGCCACCACAUCGCCGCCGCCGCAUCCCCGGCCGGCCGUCGGACCUCCUCACCCCAGCGACCUCCUGCCCACCGUCGGCCUGCCUGCCCAAUCAGAGAAGGGCGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGGAGGAGGAAAGGAGAGGAAGGGAGAGCCGGAGAGGCGCUUGCUGACUUGGCAUCCUGAUAUGUGGGUCUCACGCUGAUUUAGCCGCCACGUUAUAUAAAACCAGGCUUAAAACCGCCGAGGGACCUAGUUUGCACUGGUUUUAUAAGUUGGAGGAUGUGUUGUAUCCGGUUUUGUGGUUGGGGGAUGAUUCUGUAACUUGAUGAUAAAUUGAGGGACCUUCAGUGUACUUUUUCCAUGCUAGGGCGUAUUUUGGUGGUGUUUGGAUCCAUAAGUCCUAGGGACUUAUUUUAGUUCUAGGACUAAUCACUUUAGUCUAUGGCUGUUUGGUUAUAGAGACUAAAAGGGACUAAAGUUCAUUAAAUGCGCUACACAAUGACCAUGUUACCCUUAAAACUAUGUAAAGAUAAAUGCACCAUG
Sequence
(XR_003239184.1):
GACGAGUCGGCGAGACCGGCGUCGCCGUCUGCAAAGUCGCGGCUGUUCCCGGCCAAGGUCAAGGGGAGGGUGGGACCCGUUUCUGCGGCGGUGGCGAGCGCGGCUCGUCCGCCUCGCCGCCGUCUUCGUCGCUGCGGCCCUCAUCCUGACAGCUUCGGCCAAGAAGUCCGGAGAUGUCACGGAGCUUCAGAUCGGUGUGAAGACAAGCUCGAUUUGUACCAGGUGUCUCCGCCACCACAUCGCCGCCGCCGCAUCCCCGGCCGGCCGUCGGACCUCCUCACCCCAGCGACCUCCUGCCCACCGUCGGCCUGCCUGCCCAAUCAGAGAAGGGCGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGGAGGAGGAAAGGAGAGGAAGGGAGAGCCGGAGAGGCGCUUGCUGACUUGGCAUCCUGAUAUGUGGGUCUCACGCUGAUUUAGCCGCCACGUUAUAUAAAACCAGGCUUAAAACCGCCGAGGGACCUAGUUUGCACUGGUUUUAUAAGUUGGAGGAUGUGUUGUAUCCGGUUUUGUGGUUGGGGGAUGAUUCUGUAACUUGAUGAUAAAUUGAGGGACCUUCAGUGUACUUUUUCCAUGCUAGGGCGUAUUUUGGUGGUGUUUGGAUCCAUAAGUCCUAGGGACUUAUUUUAGUUCUAGGACUAAUCACUUUAGUCUAUGGCUGUUUGGUUAUAGAGACUAAAAGGGACUAAAGUUCAUUAAAUGCGCUACACAAUGACCAUGUUACCCUUAAAACUAUGUAAAGAUAAAUGCACCAUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
11.99%
ME_num:
MEP:
37.6%
HE_num:
HEP:
50.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.87
Avg Expression:
54.47
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.49495640220393 | 0.0284630686735464 |
| 2 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -10.0964262197033 | 1.14819958087925e-13 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.38842237312005 | 0.0238180114948015 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.4993862530597 | 1.96676129884893e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.92259237526629 | 0.00177860810864048 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.40559217444136 | 0.0376669983743618 |
| 7 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.1559580657502 | 1.7608364266691e-05 |
| 8 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -8.22293756928877 | 5.9646328320275e-07 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.98603762098253 | 0.000256218055364436 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.22485696150307 | 0.0495228396781863 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.75821759998931 | 0.00101411073671308 |