Chr:
Chr11
Start:
13521330
End:
13526263
Strand:
+
Ref_name:
LOC4350380
Sequence
(XR_001541551.2):
CCCAAUCCUAUCCAUAGAUCCAGCCAUUCCAGCGGCAGCCUCUCCUCCGGGCUGCACGCGAGGAGGCCGCACCAGCCACUCCGGUAGCCUGCCCAGCCACCAGGCGCGCAGCGCACCGCCGCCUCCUCCUUCGUCCCACCCCCUCCGUCGAUGCGCGGCCGGGACUCGGGAGCCCUGCCGGGAGCCGCCGGGAGGUGUCGUCACGCGGCCGGGAGUCGGGAGCGCCGCCUGUAGCCAUUCUCGCGCCGCCGGGAGGUGUCGUCGCGCGGCUGUGGGAGUCUGCAGCCGUCGCCGCGCCGCCGCCUAGUCCUAGCUCUCUCUCCCUAGCUCCUCCCUCCACAUUCCCCCGCCGCCACCACCCCCUCUCCCUCUCUCAAAUCUGACGCGCGCCACCACAUGCUUGGCCACCUUGCCUACACCAGGGGAGAGGCGGCGCUGGCAAGGCUGAAGGCGUACGAGGGCGUGCCGCCGCCGUACGACAGGACCAAGCGCAUGGUCAUCCCCGACGCGCUCAAGGUUCUGAGGCUGCAGCCUGGGCACAAGUACUGCCUCCUCGGCCAGCUCUCCAAGGAGGUUGGCUGGAACUACUAUGGCACUAAACAUGCUUAAAACAUACAGCGGAUCUGGAUAUUAGGAGUAUCUGUUGGAAUUUGGAAGUCUACACACUAUGCCGGUUCAGGCUAGCUGUGACGGGCCUAAACCGUCACCUCUGACGGAUUCAGCCCCUCGUCAGAGAUUAAUGGUCAGUGAUGACUCUCCUCACCUUUGACGGGUGAAGGCCCGUCAGUGGUGACCAGCCCGUAUAGAACCCGUCACAGAUAUGCCGUCAAAGGUGUGAGGAUCUGGCGUAGUGACAAGAAGAAGAAAUUCGCAUUGACAGAGCAAAGCAUUCCAAGAACGAUAAUAAGAAUGAAUCCUUCUAAGCAAAAUGAUGAAGAAAACACUGAACAUUUUUUGUUCAAGCAAAGGGUAUAACAGCUCCAUUAAUGUGCAUGGAGAAAAGCAACAGUUCACUUCAUAUAUCUGUUCAAGAGUACUUCUUUCGGUGUAUAUAUAAAAUAGUUCCAUUAUAUGUGUAUGGACAAAAAAACACUGGUCCAGUAACUAGAUCCAUAAGUAUGUCUGUGUCAUUCAGAUGGAGCUCUAUCAAAAGCUCUGAAGCUAGCUAAUACAUAGGAGUAUAUUGAUGGACUACUCUUUGGAAUCUUGGAGACAAUAUAAGAUGCCUAGGAGGACUACAUUGAGGUUGUUGCAGAGUAUGGUUGGCUGAGUUGGACAUUGAUUUUUUUUUUUUUGCUGAGUUAUUUGUGGGUGGACCUAGUGUGGACUUAGUGAAUCUAGUUUGCUCUUGUGGCUGCAUUUGUUAAGUUAACCUAGGAGGCUAGGACCUUAUUUUGAUAUCUAGGAUCUGGUGGAAUUGAACCUAGUUUGCAAUUGUAGCUGGAUUUAUUUUGCUAUGGUAUGUACUGAUGUGAGGAUACAUGUGAAUGGGCUUUGAUUGUAUGUGAUUGGGCUUUACCUGUAUGUGUUUGGGAUGAUAAAUGGACUUGUGCUAUAUUGAAUGAUAAUUGGGCCUUUAUGUAUUAUGAUA
Sequence
(XR_001541553.2):
CCCAAUCCUAUCCAUAGAUCCAGCCAUUCCAGCGGCAGCCUCUCCUCCGGGCUGCACGCGAGGAGGCCGCACCAGCCACUCCGGUAGCCUGCCCAGCCACCAGGCGCGCAGCGCACCGCCGCCUCCUCCUUCGUCCCACCCCCUCCGUCGAUGCGCGGCCGGGACUCGGGAGCCCUGCCGGGAGCCGCCGGGAGGUGUCGUCACGCGGCCGGGAGUCGGGAGCGCCGCCUGUAGCCAUUCUCGCGCCGCCGGGAGGUGUCGUCGCGCGGCUGUGGGAGUCUGCAGCCGUCGCCGCGCCGCCGCCUAGUCCUAGCUCUCUCUCCCUAGCUCCUCCCUCCACAUUCCCCCGCCGCCACCACCCCCUCUCCCUCUCUCAAAUCUGACGCGCGCCACCACAUGCUUGGCCACCUUGCCUACACCAGGGGAGAGGCGGCGCUGGCAAGGCUGAAGGCGUACGAGGGCGUGCCGCCGCCGUACGACAGGACCAAGCGCAUGGUCAUCCCCGACGCGCUCAAGGUUCUGAGGCUGCAGCCUGGGCACAAGUACUGCCUCCUCGGCCAGCUCUCCAAGGAGGUUGGCUGGAACUACUAUGGCACUAAACAUGCUUAAAACAUACAGCGGAUCUGGAUAUUAGGAGUAUCUGUUGGAAUUUGGAAGUCUACACACUAUGCCGGUUCAGGCUAGCUGUGACGGGCCUAAACCGUCACCUCUGACGGAUUCAGCCCCUCGUCAGAGAUUAAUGGUCAGUGAUGACUCUCCUCACCUUUGACGGGUGAAGGCCCGUCAGUGGUGACCAGCCCGUAUAGAACCCGUCACAGCAAAAUGAUGAAGAAAACACUGAACAUUUUUUGUUCAAGCAAAGGGUAUAACAGCUCCAUUAAUGUGCAUGGAGAAAAGCAACAGUUCACUUCAUAUAUCUGUUCAAGAGUACUUCUUUCGGUGUAUAUAUAAAAUAGUUCCAUUAUAUGUGUAUGGACAAAAAAACACUGGUCCAGUAACUAGAUCCAUAAGUAUGUCUGUGUCAUUCAGAUGGAGCUCUAUCAAAAGCUCUGAAGCUAGCUAAUACAUAGGAGUAUAUUGAUGGACUACUCUUUGGAAUCUUGGAGACAAUAUAAGAUGCCUAGGAGGACUACAUUGAGGUUGUUGCAGAGUAUGGUUGGCUGAGUUGGACAUUGAUUUUUUUUUUUUUGCUGAGUUAUUUGUGGGUGGACCUAGUGUGGACUUAGUGAAUCUAGUUUGCUCUUGUGGCUGCAUUUGUUAAGUUAACCUAGGAGGCUAGGACCUUAUUUUGAUAUCUAGGAUCUGGUGGAAUUGAACCUAGUUUGCAAUUGUAGCUGGAUUUAUUUUGCUAUGGUAUGUACUGAUGUGAGGAUACAUGUGAAUGGGCUUUGAUUGUAUGUGAUUGGGCUUUACCUGUAUGUGUUUGGGAUGAUAAAUGGACUUGUGCUAUAUUGAAUGAUAAUUGGGCCUUUAUGUAUUAUGAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
0.41%
HE_num:
HEP:
99.39%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_meristematic_zone
Tau :
0.68
Avg Expression:
103.72
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 1.87093411579086 | 0.0439425977789645 |
2 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.5894336157179 | 2.34625114298077e-27 |