OSA-LNC4350380


Function Link


Basic Info

Chr:

Chr11

Start:

13521330

End:

13526263

Strand:

+

Ref_name:

LOC4350380

Sequence
(XR_001541551.2):

CCCAAUCCUAUCCAUAGAUCCAGCCAUUCCAGCGGCAGCCUCUCCUCCGGGCUGCACGCGAGGAGGCCGCACCAGCCACUCCGGUAGCCUGCCCAGCCACCAGGCGCGCAGCGCACCGCCGCCUCCUCCUUCGUCCCACCCCCUCCGUCGAUGCGCGGCCGGGACUCGGGAGCCCUGCCGGGAGCCGCCGGGAGGUGUCGUCACGCGGCCGGGAGUCGGGAGCGCCGCCUGUAGCCAUUCUCGCGCCGCCGGGAGGUGUCGUCGCGCGGCUGUGGGAGUCUGCAGCCGUCGCCGCGCCGCCGCCUAGUCCUAGCUCUCUCUCCCUAGCUCCUCCCUCCACAUUCCCCCGCCGCCACCACCCCCUCUCCCUCUCUCAAAUCUGACGCGCGCCACCACAUGCUUGGCCACCUUGCCUACACCAGGGGAGAGGCGGCGCUGGCAAGGCUGAAGGCGUACGAGGGCGUGCCGCCGCCGUACGACAGGACCAAGCGCAUGGUCAUCCCCGACGCGCUCAAGGUUCUGAGGCUGCAGCCUGGGCACAAGUACUGCCUCCUCGGCCAGCUCUCCAAGGAGGUUGGCUGGAACUACUAUGGCACUAAACAUGCUUAAAACAUACAGCGGAUCUGGAUAUUAGGAGUAUCUGUUGGAAUUUGGAAGUCUACACACUAUGCCGGUUCAGGCUAGCUGUGACGGGCCUAAACCGUCACCUCUGACGGAUUCAGCCCCUCGUCAGAGAUUAAUGGUCAGUGAUGACUCUCCUCACCUUUGACGGGUGAAGGCCCGUCAGUGGUGACCAGCCCGUAUAGAACCCGUCACAGAUAUGCCGUCAAAGGUGUGAGGAUCUGGCGUAGUGACAAGAAGAAGAAAUUCGCAUUGACAGAGCAAAGCAUUCCAAGAACGAUAAUAAGAAUGAAUCCUUCUAAGCAAAAUGAUGAAGAAAACACUGAACAUUUUUUGUUCAAGCAAAGGGUAUAACAGCUCCAUUAAUGUGCAUGGAGAAAAGCAACAGUUCACUUCAUAUAUCUGUUCAAGAGUACUUCUUUCGGUGUAUAUAUAAAAUAGUUCCAUUAUAUGUGUAUGGACAAAAAAACACUGGUCCAGUAACUAGAUCCAUAAGUAUGUCUGUGUCAUUCAGAUGGAGCUCUAUCAAAAGCUCUGAAGCUAGCUAAUACAUAGGAGUAUAUUGAUGGACUACUCUUUGGAAUCUUGGAGACAAUAUAAGAUGCCUAGGAGGACUACAUUGAGGUUGUUGCAGAGUAUGGUUGGCUGAGUUGGACAUUGAUUUUUUUUUUUUUGCUGAGUUAUUUGUGGGUGGACCUAGUGUGGACUUAGUGAAUCUAGUUUGCUCUUGUGGCUGCAUUUGUUAAGUUAACCUAGGAGGCUAGGACCUUAUUUUGAUAUCUAGGAUCUGGUGGAAUUGAACCUAGUUUGCAAUUGUAGCUGGAUUUAUUUUGCUAUGGUAUGUACUGAUGUGAGGAUACAUGUGAAUGGGCUUUGAUUGUAUGUGAUUGGGCUUUACCUGUAUGUGUUUGGGAUGAUAAAUGGACUUGUGCUAUAUUGAAUGAUAAUUGGGCCUUUAUGUAUUAUGAUA

Sequence
(XR_001541553.2):

CCCAAUCCUAUCCAUAGAUCCAGCCAUUCCAGCGGCAGCCUCUCCUCCGGGCUGCACGCGAGGAGGCCGCACCAGCCACUCCGGUAGCCUGCCCAGCCACCAGGCGCGCAGCGCACCGCCGCCUCCUCCUUCGUCCCACCCCCUCCGUCGAUGCGCGGCCGGGACUCGGGAGCCCUGCCGGGAGCCGCCGGGAGGUGUCGUCACGCGGCCGGGAGUCGGGAGCGCCGCCUGUAGCCAUUCUCGCGCCGCCGGGAGGUGUCGUCGCGCGGCUGUGGGAGUCUGCAGCCGUCGCCGCGCCGCCGCCUAGUCCUAGCUCUCUCUCCCUAGCUCCUCCCUCCACAUUCCCCCGCCGCCACCACCCCCUCUCCCUCUCUCAAAUCUGACGCGCGCCACCACAUGCUUGGCCACCUUGCCUACACCAGGGGAGAGGCGGCGCUGGCAAGGCUGAAGGCGUACGAGGGCGUGCCGCCGCCGUACGACAGGACCAAGCGCAUGGUCAUCCCCGACGCGCUCAAGGUUCUGAGGCUGCAGCCUGGGCACAAGUACUGCCUCCUCGGCCAGCUCUCCAAGGAGGUUGGCUGGAACUACUAUGGCACUAAACAUGCUUAAAACAUACAGCGGAUCUGGAUAUUAGGAGUAUCUGUUGGAAUUUGGAAGUCUACACACUAUGCCGGUUCAGGCUAGCUGUGACGGGCCUAAACCGUCACCUCUGACGGAUUCAGCCCCUCGUCAGAGAUUAAUGGUCAGUGAUGACUCUCCUCACCUUUGACGGGUGAAGGCCCGUCAGUGGUGACCAGCCCGUAUAGAACCCGUCACAGCAAAAUGAUGAAGAAAACACUGAACAUUUUUUGUUCAAGCAAAGGGUAUAACAGCUCCAUUAAUGUGCAUGGAGAAAAGCAACAGUUCACUUCAUAUAUCUGUUCAAGAGUACUUCUUUCGGUGUAUAUAUAAAAUAGUUCCAUUAUAUGUGUAUGGACAAAAAAACACUGGUCCAGUAACUAGAUCCAUAAGUAUGUCUGUGUCAUUCAGAUGGAGCUCUAUCAAAAGCUCUGAAGCUAGCUAAUACAUAGGAGUAUAUUGAUGGACUACUCUUUGGAAUCUUGGAGACAAUAUAAGAUGCCUAGGAGGACUACAUUGAGGUUGUUGCAGAGUAUGGUUGGCUGAGUUGGACAUUGAUUUUUUUUUUUUUGCUGAGUUAUUUGUGGGUGGACCUAGUGUGGACUUAGUGAAUCUAGUUUGCUCUUGUGGCUGCAUUUGUUAAGUUAACCUAGGAGGCUAGGACCUUAUUUUGAUAUCUAGGAUCUGGUGGAAUUGAACCUAGUUUGCAAUUGUAGCUGGAUUUAUUUUGCUAUGGUAUGUACUGAUGUGAGGAUACAUGUGAAUGGGCUUUGAUUGUAUGUGAUUGGGCUUUACCUGUAUGUGUUUGGGAUGAUAAAUGGACUUGUGCUAUAUUGAAUGAUAAUUGGGCCUUUAUGUAUUAUGAUA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

0

LEP:

0.0%

ME_num:

2

MEP:

0.41%

HE_num:

489

HEP:

99.39%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

root_meristematic_zone

Tau :

0.68

Avg Expression:

103.72

Tip: OSA-LNC4350380 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h1.870934115790860.0439425977789645
2Nipponbare // panicle // AM--/--Nipponbare // panicle // PM2.58943361571792.34625114298077e-27