Chr:
Chr11
Start:
13215312
End:
13217290
Strand:
+
Ref_name:
LOC4350371
Sequence
(XR_001541296.2):
GUAGACUGCCAGACGGUUUCUCCACUCCAAUCGCCACUCGCCACCGCCGCCCACCCGCAACUGCCGCCGACUCCUCCGCCAAUCCACCCCCACGAACGAUUCUUCCUCGCCGACGCCGCCACCCACCCACAACCACCGCCGCCUCCGCUCCAGAUCCCCCGCCGGGCAGAGUCUUACUCCUCCUCCUCCCCGCCGCCGACUCUUACUCCUCCGCCCACUCACCACGCGCGCUGCCCGCUUGCCUCCUCUGCCCAUCCACCCCAGCCGUCGACGCCGCCGUCACCCACCCGCAACCGCCGUGGACGCCACCGUUGCCGACGCCUACUACUUCGCCCACUAGCCACGCGUGCUGCCCACCUGCCUCCUCCUACCACCAGCCGCCGCCGACGACUAAUCCUCCAGAUCGCCACAGUCGCCGUGGCUGCCGCCGUUCGCGUGCUCCUCCUACCCAUCAGCCCAUUGCCCCGCGUCGCUUCGUCUCCUCACCCCGCUGCUUCUCGACACCGCCACCGCAGGAUUUGGGAGCUACAACGCAACGACGAGCUACCACCGCACCGAUCGCCAACUCUGAAUGAUUGAAUUUCUGAAGCCGAAGAUCGCCGAGCCAGCGACGAUCUCCUCCGCGGCAGCCGCUGACCGGCUCCGCCCGCCUGCCGAAACGAACGUCAUGUGUGUGGUGUGGCUAAAUGUGUUUGAUACAAUCAGGUGCGACAGCUGGUGAAGACUACGACGGCGGUGGCGGUGGUUCUUCGACGGUCUGGGCUGGCGUUGUGGCAGCUGACACAGGCGGCGCGGGCGAGAAAACGGCUCAAAAACGAUCUUUGCGGCAAACCAGUCCAGGCCUGCGGUCGCUGCCGAUGUCGAGCCACCAAUCUCACACAGAAUCUAUGCCGUGAUCUCCGCCGCCGAUGCCGGAUAUCUGCCCGCCGUCGGUUCGGACACCCCGCAUUCGCGCGCGGCGCCACCGACGCCCGGCAUCCUCUCACACGCAACGCUGGCCGCCGCCUAACCCAACAGUAGUCGCCGCUCCAACUGCAUCACAGCAGCCGCCGGGCGCCGUAGAUUCCGACACCCCUCCUUCGCGUGCGACGACGCCGACUCCCUGCAAUGGGCAAGCACGAUGGAUCAGCAUUUUGUUCUUUUUCUGAGGUGUCAUCCUGCAUGUGCAGGAAAGUGAAGAGCAUGCAAGCCUAGAUGAGUACAUGGAGAACUGGUUUGGACUGGAUCAAUACUAAUGUGCGUGCAACAACUACUGCGACAGCACGGGCAAAGGUCUUCAGACUGAAGUUUCAAUGUAGCUUCAUCAAAUUUUUGAAAGCUUUCAGCUCUUGUGAUUGAGGCAGGUAUCUCUGCCCUCCUUGUUUGAGGAUUGAGUAUAUGAGAAACUGAAGUGAAGGAGGAUUUGUGCAUGAAAAAUAUUGCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
40.24%
ME_num:
MEP:
48.17%
HE_num:
HEP:
11.38%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.85
Avg Expression:
12.48
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.57359073278949 | 0.0199003350564849 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.45817807375105 | 0.0348942146471683 |
| 3 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | -6.55356079945124 | 0.0491619374959413 |
| 4 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -6.63332044347654 | 0.0486837534525054 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.97155696004678 | 0.00113759800963323 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.40325021266167 | 0.0138418506009652 |
| 7 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -2.33403702275102 | 0.011919773168734 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.42385871878087 | 0.0127345978472037 |