Chr:
Chr11
Start:
11388274
End:
11391314
Strand:
-
Ref_name:
LOC4350331
Sequence
(XR_001541031.2):
AUCUCGCCGCUCUCGCGGCCCUUUCUCUCCCCGCCAGCUCAUGCCUCGCCUCCGUGCGCCGCGCUCCUCGCCCUCGCUCUCGCUCGUGCAGUGACAUGUCACGCGCCGCCGCCUUCACCUCCUCCAACGGUCCAUUGACGAUGAAGACGGAAAGAGAGAGGGCGAGAGCUAGAGGGGAUGGGGAGAGGAAGGCACGCAGCGAGUUCCCCUCCUUCCUUCGUAGCAAUUGGUGCUUCCACCAGCAAGCUUUCUAUAACGUGGAGUGUCGCCGACCACGGCCGCAGCCUCCUUCCUCUGGAUUGGACUCCACUGGGAACUCCUCCGACAUAUCAAGUGUGCCUGUCCACCUUCUACCUCUGAGGCAAAGAUUGGAUCAAGCAAGCUGGAUCUGACUCAGCACCUUGAUCUGCUCAACAACCGGAGCCCCCACCUCCUUAUACAUCCCAAAGAUGGAUAUGCAUCUUCUGUAUUCAGUUAGGAUAAGGCUUCCAAGGUCUGCAUAAAGCAACCGUGAGACUCACAUGCUACAAAAUUUUGGUUUCACAUGAUGUUUAUGACUGAAAGUAAUGCAGUAUCAGGCAUGCAAAAAUAGAAGUUUAGUUGAUCUACUGGUGCUUCAUCUGCAAACACCAUGGAUCAGUUCAUGACAGCAUGACCAUAAGGUUGGGAGGGACAAGAACAAGGUGUCCAUUAAAGUUAUGGAGAUAAUGCUGUUCAGGCCGGUCCAGUGAAAAGAGAUUAAAGAGGAUUAAAUUGUUUGCAGGUCAACGUUUUAUUAGUUCAGUGCAAUCAUUCCCUGAUUGUCAUAUUUAGUCAUAAAUUGAUUGUACAUUUGUACAAAUCGUUGAAGUAGUUCUAUUUAGAUUUAUAGGUUGCAUUACUAUUUGAAAAUGUGUGGCACUUUAUCUAAGGGCCUGUUCAGAUUGAUGUCAUUUUCAACCAUACCAUUUUUGGGCAUAGUUGCCAAAAAUGUGGCUAUGUUUAGUUUGUUGCCAAAUUUUAGUAAAUACAUAAGAAAUCCUGUCAAAAUUUUGGCAAUAUUGCCAACUUACCAAAAUUUUGGUAUUGCUUACCAAAAUUUGCAAGGUUUAUUUUGGCUACAAUCUGAACAGGUCCUAAAAGUUGAUAUAUUCAGUACUAAGUUUACUAUUAUGUUGUUUUUUUGUUAGGACUACAAGAGAAUACAUUUGUGUAUUUGACGAAAACCCGAGUUUUGUGGUCCAUCAAGAUCUCACUAUUUUCUUUCCGAAUUGUCAAUGCAUGUGUCACUGCAAGCUGUUUGGUCGUCUAUAUAUGAUCAAAAGAUUUAUGUUGUGUUUAAUAUUGGAUUGUAAGAUUUUCUUAUGCCAUGUAUAUGUACACUUUACAACUAUAAAUGCCUUCAACAUGCAUCUCAGCUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.2%
ME_num:
MEP:
19.11%
HE_num:
HEP:
80.49%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.65
Avg Expression:
36.71
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | 1.79839098778248 | 0.0338865693202835 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.00311508623021 | 6.72989658685849e-05 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.68942135761936 | 9.98788502010154e-09 |
| 4 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 1.78116050562855 | 0.0240873797830046 |
| 5 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.39223315793243 | 0.0001005749342683 |
| 6 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.47097483895792 | 1.13872049659697e-12 |
| 7 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.34369355732892 | 0.00132233853557906 |