Chr:
Chr11
Start:
10925248
End:
10926527
Strand:
+
Ref_name:
LOC4350318
Sequence
(XR_001541089.2):
UCCCCUUCUCACUCACUCUCUCUUUCUAUCAUCUCCCCUCACUCUCUCUUUCUCUCCUCUCUUGCUCUCCACUCCUCCUCGGGCGGCGGUGGCAGGAGCUGGCGGCGUCAAGGGGGGCUCUCGGCCGCCUCGGGCUCUGGCCUGGAGCUGGCGGUGGCUGGGGCGGCUCUGCCUGGAGCUAACGGCGGCGGGGGCGACGACCUCGGCGAAGAGUGGGCGGUGGCGGGCCUCGUCUCACUCGGAUCCGGAGGCGGCAGGCCUUGUCCUGCUCGGAUCCGGCGACGGCGGGCCUCGUCCCGCCCGGAUCCGGUAGCGGCCUCGGGGGAAGAGUGGGCGGCGACCUCGUUGACCUUGGGGGAAGAGUGGGUGGCGGCGCCAUCGCCAUCUCCUCCUCACCGCCGACGACGAGGAGGUGGCCAGAUGCAGCCCCUUCGUCGCCGCCUCGCCGCCCUAUUCAUCCCCCCACCCCCCGGGGCGGGUACCGGCGCCUCGGCUCCUCCGCCUCCGUGUCCACGACAACGGAUGUGAUUUGGGUGGAGGUUGGGACGACGAAGGGGGAUAGGAGCUUAUUCCAUGUCGAUUCGGCCGUGCUUGAGACCGGGUCGGUGCGGCGCUUCCUCGCGGUGGCUGGGCAGCGGGCCCGCGGCGGUGCGGUGGCGGUCGCCAUGGACGCGCUGCUGUUCGAGCACCUGCUGUGGCUGCAGGCGGUGGGUACAUGAGCUCAAGCUUGCCAUGAAGCCGGUGCAAUUCUUCUCCAGCUCCAGUGGGCUGGCGCCCCUUCUGCAUCUCGAUGUGGAUGGGUUCAGUGGCCUCUUACCCUAAUCCCCCACCUCGUGCUCUUUUCUCUCGCUCUUCAUGGCGUGGCAAACCAGCGCCCAGCGGUGCCGCCGUGCUGCGCGUGUGGUGGCCUGACGAUGGCUCAAAGCAGAACAUAGCGCCAGAUUUGGUCAAGCCCUCCAGAUUUUCCCUUUACAUGGUGAUAAAACUAGCUAUAAUGGUUGUAUUUUUUUGGUCGAACUGCAAACAUUUCAGUGUUGGUAUCGUUGCAUGAAUUUUGUUUACGAAUGUUCUAUGGUUCACAUGUGCAGCUGCCCAUUGCCAUUCUUCCUUCUCUGACAUUAUCUAUGAAGUAUGUAUUUUUUUUCCUUGAAGAUUUAUAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
26.02%
ME_num:
MEP:
21.75%
HE_num:
HEP:
52.03%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
crown
Tau :
0.75
Avg Expression:
54.49
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.83876162798307 | 7.33970752300259e-08 |
| 2 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -5.9324446255273 | 0.00298378182385807 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.52805688031831 | 3.29796118195486e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.04617090902618 | 2.62311504707061e-10 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.80611075425457 | 0.0394591118423295 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.67389630149831 | 4.00869374904212e-06 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.17668770581873 | 0.00015680952506556 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.33032604678613 | 4.29049202490264e-05 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.35588820390666 | 5.98157950073936e-14 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 2.07823942025913 | 0.0362723889691736 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.62465237526411 | 2.61531669486235e-06 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.10331760569141 | 8.28171814642787e-05 |