Chr:
Chr11
Start:
8864463
End:
8867244
Strand:
-
Ref_name:
LOC4350235
Sequence
(XR_001540947.2):
UGGAAACACCGAGCCCUCCAGCUCAUCCCUGCCCUCAAACCUCUCCAAACUGCCGCCAAGGUCACUGGCCAAAUCCACCGUCGCCGGCCCUUUUUUCUGCCACAACAGCAGGCCAUCAACUUCGCCGCUCAUCAGCGAUUAGUUUUUCCCUGAGGAGGCACAGGAAGGGGAAGAAUUCUAUGGUGCUGACGAGUUCUUGUUAUAAGUCGAUCUGCUCUCAGGCGUUGCCUGUGGUGUUUUUAUCCUAUUUUGUGUUCGGGUCUUUUGUUUGUAGGGAGUGUGUUUGGCCUGUCGGCCCCUAAAACCUGUCUUAGUUAUCUUUUAUGUAAUAAUUUCUGUAAAAAGUUGGGUAUAUGUAUUGAAAGCUGUUCUGUAUAUCAAUCUGUGCGCGAUCGAAAUCCUGGACGGGUGGUUUCGGGAUACCAUACUCAAACCGGGUAUCCCCACAAUCUUUCACUCAAAAUUUGGAUGGAGGGGCGGCAGACAAAGAAUAGGAUGGGAAACAGAGGCAGGCUAAACUGAUGGCGAAGAGUUUGAAGACGGCGAUGGAAACCUGUGUUUUGAUGCUUGAAAUGCCAAUAUUUUAGUCCUGUAAUAACUGUUUGUUUUCCUUUUUUUUCUCGUCUUAUCUGUAAGAACUAGAUGUUCUGGAACUCUUGUAAUCAUCUGCGUUUUAUUUAAUGAAAACGGGGGAGAUACCCUCCCUUUCUAAAAAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
41.67%
ME_num:
MEP:
29.27%
HE_num:
HEP:
28.86%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.97
Avg Expression:
118.44
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 4.70545272551951 | 5.16242757876737e-05 |
| 2 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -9.86148626201012 | 2.38038596473108e-08 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.52009265218607 | 0.0101067248759504 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 8.33768894871371 | 5.81668359959313e-16 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.17539269307683 | 0.0291649170409722 |
| 6 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | -8.74519804489825 | 2.75793177048935e-07 |
| 7 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -2.09932498612911 | 0.0308754417516363 |
| 8 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -3.71572066370746 | 0.000806875988442016 |
| 9 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -7.82467265587751 | 6.9052530630796e-05 |
| 10 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -2.6596455187849 | 0.000443393232936202 |
| 11 | Baldo // root // control--/--Baldo // root // 100 mM NaCl | -6.07802224256669 | 3.83639817655148e-18 |
| 12 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | -6.00981907786688 | 1.23766790487232e-134 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.77966377124828 | 1.95955889802033e-05 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 4.28115645238494 | 0.000213816312873844 |
| 15 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -5.96226277414961 | 1.4329210553464e-21 |
| 16 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | -1.33524802071339 | 5.39201002411042e-12 |
| 17 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.89680926246001 | 1.72982074731203e-05 |
| 18 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 4.98187014528135 | 0.0285113179699715 |
| 19 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.47380982828997 | 5.0634742012424e-05 |
| 20 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -8.40219797619934 | 3.02199122385673e-19 |