Chr:
Chr11
Start:
6648991
End:
6650271
Strand:
+
Ref_name:
LOC4350119
Sequence
(XR_001541226.2):
UGUUUGCAAAUUCCUGAUACUCUAGUUACUGAGCUGGUCUUCGAGUAGUAGUGGUCGCUGGUUGGUGAUGCCACUUGAGCAACGACUUGGGUUUUAGGUCGUCGCGGCCGAAAAAAAUAUCAAUCUCUGCGCGAAUCAUUGGCGUAGGCCAGCCUGGGAGAGAGGAAGGAAGCAUCUUCCUGUGCCUCUCCUUACCCUCUUCGUCUUCUUCUCCAUCUCCUUGUGUGCUCAGUAGCUUCUCCUCCUACGAAACCAACCAGCUGCCGCCGGUGACCGUCGAUCCGUCGACCGCCGCCGCCAUGAGCAGCGAUGUUCCUGGGUACUUCGUGGGGCGGCCGAUGAACCAAGCGGAGCCUGCGAAAGAACAGCAGCAGGGCGCCGACGAGCAGCGGCCUGCUACCAACGCGCAGAUCCCUGGUGACUACUUCGUCGGGCGUCCGGCAAACCCGCAGCAGCCGCCGUCGCAACCUCCGCGGGCGCAGGAGAGAUCGAGCUUCUUGGCCAAAUGCUGCCCAUGCCUCGACAGCCGAGCUGAGGGAUAGACGAACAAGUGCGGCGGCGGGCGUGACCGUAAAUUCGAUGGGAAAAUUGAAGCAAAUUUGCUUGGAGUGAUAAGGCUCGGAUCUGUGUUUGUGUUGCAAGUUUUGCUAAUAGAUGUUUGUAACUGAAGGUUGCUUCUAUUCAUUUGUAUACCAAUUGUUCAUUCGUAUCAUCAGAGUGCGAAUUCGAUGAAAUUGUCCAUUCCAAUCCGGCAUGCCUUUUCUCCUUCCUUGAAAUGAAUAUUCUGCUCCAUUGCUGGCAAAUGUCAAGAAUGAGUUUGUUGUUUUAUUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.81%
ME_num:
MEP:
12.4%
HE_num:
HEP:
86.59%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_differentiation_zone
Tau :
0.86
Avg Expression:
228.37
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 4.08211077073084 | 1.43559339605478e-40 |
| 2 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -3.59102126837667 | 2.01760164657849e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.8817611436087 | 7.32369606394894e-37 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 3.5h | 1.10754452489296 | 0.00976217066174094 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 6.29000392906218 | 3.97506233324728e-115 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 6.24116635416299 | 8.72214905266038e-72 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 6.22238498882045 | 5.6442976459499e-112 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 6.55836340137182 | 1.61608255146433e-128 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 2.1740023669489 | 4.22270851102861e-08 |
| 10 | IR64NIL // root // control--/--IR64NIL // root // Al | -1.00974922404731 | 0.0172925855211191 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 2.63698891284457 | 1.15453391763976e-12 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 4.74362545633348 | 8.5776241387237e-65 |
| 13 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | 1.11349158937702 | 0.0040053832398757 |
| 14 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 1.54325514570835 | 0.000711793748280557 |
| 15 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 1.36658141615382 | 2.16501403296142e-05 |
| 16 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.03139064221891 | 6.66300004117436e-05 |
| 17 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -1.85376225070854 | 0.00420000483158552 |
| 18 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 3.50246652884092 | 2.41294459829627e-27 |
| 19 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | -1.2678701357163 | 6.80912379474702e-08 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 6.6621670804555 | 2.72357890165635e-144 |
| 21 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 5.04823739232874 | 1.07501238503944e-75 |
| 22 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.01165389518155 | 0.035819964210438 |
| 23 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 5.30472592106664 | 7.5959753722961e-60 |
| 24 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 5.6673400122844 | 1.78144401458986e-99 |
| 25 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hN | 1.2389760544186 | 0.0487231646292491 |