Chr:
Chr11
Start:
5282017
End:
5284697
Strand:
+
Ref_name:
LOC4350021
Sequence
(XR_001540943.2):
AACCCUUCGUUUCUCGCCUCUCACGGGCCGGCGACGCCUCCUCCCCUGUCCCCUCCUCUUCCUUCUUGCCCGGGCUCUUCCAAUUCCAUGCCCCCCCCGGCCCGCCACUCCUCUCAAUCCGCACCGCCACGCCAUACCUCCUUCCACUUCCCCAGUGAGAGCACGGUGUAGUUCGAGAGAACGUCUCCCCUACCCAGCCGCUUCUAGACGACAACACAGGUGUUCCUGCCGGAUCUAACAGUACCUAGCUGCAAGGCGCCAGAGCUUGCCGCCGUAACCUCCAUGGCUGGAUCCAAGGCGGACCGCAGCGAGGAGAAAGGGGCUGCUUCCUCCGCACCGCCCUAGCUUGAGAAGAUGUUCGAGGUGCCAGUGGAGUUGUUGGUGGCCGGCAGUCGGACGACAUCACCGAAGACGCGAGAGUCGGAGCUGGUCAGCCAUUUCCUGGGUGGCACCGAGCCGGCCCUGUCCGUGCAGCUCGGCGACCUCGGCCACCUCGCCUACUCCCAUCCCAUGCCAACCAAGCCCUCUACCGCCGAACGGCCCAAGAUACUGGAAUCAUGCUUUCACUCUUAACAAAGCUUCAUUUUGUAGUUGAAAUUGCACAAGCUGUGCUGUUCUUUGCCAUGGAUUUUGUGUUAUCUUACCAAGAGCAGAACAAAAUUGGUAAUUGCUAUUGAUUUGUUGUAUUCUUCCUGAGACAGACUCAUUUACUCUGCUUUUACUCUGUAGUUAGACAUGAUUUGUUUCGUCUUUUGAGGAAGAGCCUAAAAAAUAAGUUCAAGGCAAGAUUUGGGACUUACCAAUAGGAAGGACAAAAAAUAGCUCAAGGCAAGGUUUGAGAUAAGUUUGUACAACCAAUGUAUGUCCAAAGAGAAAAUUUGGGUUGGAUGCAUAGUCAGUCAAUAGAGGAGAAACACAGCAGCCGGUUAAGUUACCCUGCAGGAAUAUUAUAAUUUUCUAUUUAGUCAAUGCUCAAAUCAAUGUAAAGCGAAAUUUGUACUAAUUAACAGCACACAAAUAUUGUACAUGAGCUCUCCGCCGUUGGACAGCACGCUGGUGAUGCUGCUGCUGCCCUCCUUCCUCUCCGAAGAAAGCUCCAGCAAGCUGAUGUGGAUGCUGUGUUGCUGCCCUCCUCUGCCCCCUUUUCUUUAUGAAGAUAGCUGAUAGCUGCAGGACUAAAUAGAGUAAAUUUUCAGUUCAAUUUUGGAUUCAUUUUACUGACCAAAGGUAGUAGGAAUAAUGAGGAAAAGCUCAGAUCUACAGGAGCUCAACUGCAGAGGCAAUGAUGACAUUCUGAUUCGUAUGUAUAUAGUGGAAAUAGUUUGUACUAAUGAUGAUCUGAUCUCCUAAUAGGUCCAAAACCUGUCAAAUGCUGUGUAUAUAAUGUAUAAAGGAUGCGAAAUAAAACAUGAUUUGUGGUCCUUUGGGAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
34.96%
ME_num:
MEP:
9.96%
HE_num:
HEP:
54.88%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.79
Avg Expression:
43.42
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.05238612479903 | 1.43011077444795e-06 |
| 2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.35368330426126 | 1.95239171837444e-11 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.17177218578644 | 1.71649880121297e-05 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.36904180543983 | 4.10449458199867e-10 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.19990666563397 | 2.54871882272109e-06 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -1.05869053302226 | 0.00438515662964526 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.29501396434385 | 1.86405253219708e-06 |
| 8 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.46233159426775 | 2.74396593527402e-31 |