Chr:
Chr10
Start:
18656457
End:
18657272
Strand:
+
Ref_name:
LOC4348975
Sequence
(XR_001540643.2):
AAAUUCUGAACCUCAAGAACUAGACCAAAGCAACAAAGCGAGGUGCAGUUUCAGUGAGGGAGGAAAAAAAGAGUGAGAAGAAAGUCGAGAUCAUGUCCCUUUGGAAGGUGCUCCUGAUGGUAAUCGCGCUCAUCUGCGCCCUGCAUACUACUUCAGGGAGACCUCCCGUCGUGGGAUAUCCUGCUCCUCGUCCCAACGGUAGCUCGGGCACACGAUGCUACGAAGGCUGCAACCCUCCAGGUAGAGAUGGCAACAGGGAUCCAUAACAGAGACCCUCUGCUACCCUCCAGGUAGAGAUGGCAACAGAGAUCCAUAACCAGAGACUCUAUAGGUUUUUAUUUUAUUAGGAGUCAUAUAUGAUCUAAUUCUUGUAUCUAUGGAUUUAUCAACAGAAAAAAAAUCCUUACAUGUUGGAUAGAUGGGUAUUAGUUCUUUAGCCACUCGUACCCCUUACCUAUGGGUAAAAAAUACCUAUAUGCUUAGCGUGAUAGUUUACUUACUUUGAACGUUCAUGUAUGGUUUAAUACUAGUAUGGUUUAUUUACUUGUUAUAUAUGGUUUAAUUCUUGCAUGAUUUGUUUACUUGUAUUUGAAUGCUAAUACUAAAACCAAGGUUACUUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
20.12%
ME_num:
MEP:
30.89%
HE_num:
HEP:
48.78%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
crown
Tau :
0.93
Avg Expression:
69.32
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 6.70805961124599 | 1.20728212828381e-09 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 4.1372510907969 | 0.00129932444941684 |
| 3 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.11725253113123 | 0.0230454339718209 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -3.12901014165755 | 0.0363871363724813 |
| 5 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 2.63329572760573 | 5.10868711306193e-07 |
| 6 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 3.68845911208217 | 4.78632063435588e-08 |
| 7 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 2.35712815532821 | 3.5134838146594e-15 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 3.55022603062785 | 0.0114729817713855 |
| 9 | Baldo // root // control--/--Baldo // root // 100 mM NaCl | 1.71376860564579 | 0.00185234217334874 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.66769902912242 | 5.28446008496838e-05 |
| 11 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 3.50779251776998 | 2.03534861581525e-20 |
| 12 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.84865180371249 | 7.91493600489725e-37 |
| 13 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.88640163721026 | 0.0422552585408057 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 4.28537276922641 | 0.000145740490405235 |